Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim54Q9ERP3 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Trim54Q9ERP3 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.28■■□□□ 1
Trim54Q9ERP3 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim54Q9ERP3 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
Trim54Q9ERP3 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Trim54Q9ERP3 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim54Q9ERP3 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
Trim54Q9ERP3 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Trim54Q9ERP3 Reep4-203ENSMUST00000226563 1444 ntBASIC21.28■■□□□ 1
Trim54Q9ERP3 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim54Q9ERP3 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.27■■□□□ 1
Trim54Q9ERP3 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
Trim54Q9ERP3 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Trim54Q9ERP3 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC21.27■■□□□ 1
Trim54Q9ERP3 Gm27801-201ENSMUST00000184174 223 ntBASIC21.27■■□□□ 1
Trim54Q9ERP3 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.27■■□□□ 1
Trim54Q9ERP3 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim54Q9ERP3 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Trim54Q9ERP3 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Trim54Q9ERP3 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim54Q9ERP3 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim54Q9ERP3 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.25■□□□□ 0.99
Trim54Q9ERP3 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 Gm13234-201ENSMUST00000120010 747 ntBASIC21.24■□□□□ 0.99
Trim54Q9ERP3 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim54Q9ERP3 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim54Q9ERP3 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Trim54Q9ERP3 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim54Q9ERP3 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.23■□□□□ 0.99
Trim54Q9ERP3 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim54Q9ERP3 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.23■□□□□ 0.99
Trim54Q9ERP3 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim54Q9ERP3 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim54Q9ERP3 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim54Q9ERP3 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim54Q9ERP3 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trim54Q9ERP3 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim54Q9ERP3 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim54Q9ERP3 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim54Q9ERP3 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.99
Trim54Q9ERP3 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Trim54Q9ERP3 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
Trim54Q9ERP3 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
Trim54Q9ERP3 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim54Q9ERP3 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trim54Q9ERP3 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trim54Q9ERP3 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.2■□□□□ 0.98
Trim54Q9ERP3 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.2■□□□□ 0.98
Trim54Q9ERP3 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.2■□□□□ 0.98
Trim54Q9ERP3 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim54Q9ERP3 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim54Q9ERP3 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Trim54Q9ERP3 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Trim54Q9ERP3 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim54Q9ERP3 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms