Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.79■■□□□ 1.08
Smc1aQ9CU62 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Smc1aQ9CU62 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Smc1aQ9CU62 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
Smc1aQ9CU62 Gm7143-201ENSMUST00000222811 859 ntBASIC21.78■■□□□ 1.08
Smc1aQ9CU62 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Smc1aQ9CU62 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.78■■□□□ 1.08
Smc1aQ9CU62 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC21.78■■□□□ 1.08
Smc1aQ9CU62 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
Smc1aQ9CU62 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.77■■□□□ 1.08
Smc1aQ9CU62 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Smc1aQ9CU62 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Smc1aQ9CU62 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC21.77■■□□□ 1.08
Smc1aQ9CU62 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.77■■□□□ 1.08
Smc1aQ9CU62 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Smc1aQ9CU62 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Smc1aQ9CU62 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Smc1aQ9CU62 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Smc1aQ9CU62 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC21.76■■□□□ 1.07
Smc1aQ9CU62 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Smc1aQ9CU62 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Smc1aQ9CU62 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Smc1aQ9CU62 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.76■■□□□ 1.07
Smc1aQ9CU62 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Smc1aQ9CU62 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Smc1aQ9CU62 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Smc1aQ9CU62 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Smc1aQ9CU62 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.75■■□□□ 1.07
Smc1aQ9CU62 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Smc1aQ9CU62 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Smc1aQ9CU62 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Smc1aQ9CU62 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Smc1aQ9CU62 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Smc1aQ9CU62 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.73■■□□□ 1.07
Smc1aQ9CU62 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Smc1aQ9CU62 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Smc1aQ9CU62 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC21.73■■□□□ 1.07
Smc1aQ9CU62 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Smc1aQ9CU62 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Smc1aQ9CU62 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Smc1aQ9CU62 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Smc1aQ9CU62 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Smc1aQ9CU62 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Smc1aQ9CU62 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Smc1aQ9CU62 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Smc1aQ9CU62 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Smc1aQ9CU62 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.69■■□□□ 1.06
Smc1aQ9CU62 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Smc1aQ9CU62 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms