Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm15043-201ENSMUST00000118843 1543 ntBASIC22.04■■□□□ 1.12
Ushbp1Q8R370 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Ushbp1Q8R370 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ushbp1Q8R370 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ushbp1Q8R370 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ushbp1Q8R370 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ushbp1Q8R370 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
Ushbp1Q8R370 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Ushbp1Q8R370 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ushbp1Q8R370 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC22■■□□□ 1.11
Ushbp1Q8R370 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ushbp1Q8R370 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC22■■□□□ 1.11
Ushbp1Q8R370 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Ushbp1Q8R370 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC22■■□□□ 1.11
Ushbp1Q8R370 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
Ushbp1Q8R370 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC22■■□□□ 1.11
Ushbp1Q8R370 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC22■■□□□ 1.11
Ushbp1Q8R370 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Ushbp1Q8R370 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Ushbp1Q8R370 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ushbp1Q8R370 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ushbp1Q8R370 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ushbp1Q8R370 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.99■■□□□ 1.11
Ushbp1Q8R370 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Ushbp1Q8R370 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ushbp1Q8R370 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ushbp1Q8R370 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC21.99■■□□□ 1.11
Ushbp1Q8R370 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ushbp1Q8R370 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ushbp1Q8R370 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Ushbp1Q8R370 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ushbp1Q8R370 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.96■■□□□ 1.11
Ushbp1Q8R370 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ushbp1Q8R370 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.96■■□□□ 1.11
Ushbp1Q8R370 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Ushbp1Q8R370 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Ushbp1Q8R370 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Ushbp1Q8R370 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.96■■□□□ 1.11
Ushbp1Q8R370 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ushbp1Q8R370 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ushbp1Q8R370 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ushbp1Q8R370 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ushbp1Q8R370 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ushbp1Q8R370 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.95■■□□□ 1.1
Ushbp1Q8R370 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ushbp1Q8R370 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ushbp1Q8R370 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ushbp1Q8R370 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ushbp1Q8R370 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ushbp1Q8R370 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Ushbp1Q8R370 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Ushbp1Q8R370 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ushbp1Q8R370 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Ushbp1Q8R370 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms