Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trim56Q80VI1 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trim56Q80VI1 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Trim56Q80VI1 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Trim56Q80VI1 Gm43060-201ENSMUST00000200621 289 ntBASIC23.3■■□□□ 1.32
Trim56Q80VI1 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trim56Q80VI1 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Gm11421-201ENSMUST00000122124 294 ntBASIC23.29■■□□□ 1.32
Trim56Q80VI1 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Trim56Q80VI1 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC23.29■■□□□ 1.32
Trim56Q80VI1 AA386476-201ENSMUST00000098781 1665 ntBASIC23.28■■□□□ 1.32
Trim56Q80VI1 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trim56Q80VI1 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trim56Q80VI1 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trim56Q80VI1 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trim56Q80VI1 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Trim56Q80VI1 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trim56Q80VI1 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Trim56Q80VI1 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
Trim56Q80VI1 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trim56Q80VI1 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Trim56Q80VI1 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC23.27■■□□□ 1.32
Trim56Q80VI1 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trim56Q80VI1 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trim56Q80VI1 Gm20100-201ENSMUST00000209418 2272 ntBASIC23.27■■□□□ 1.32
Trim56Q80VI1 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trim56Q80VI1 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trim56Q80VI1 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trim56Q80VI1 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim56Q80VI1 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim56Q80VI1 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim56Q80VI1 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim56Q80VI1 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC23.26■■□□□ 1.31
Trim56Q80VI1 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC23.26■■□□□ 1.31
Trim56Q80VI1 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim56Q80VI1 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
Trim56Q80VI1 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trim56Q80VI1 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Trim56Q80VI1 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC23.25■■□□□ 1.31
Trim56Q80VI1 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC23.25■■□□□ 1.31
Trim56Q80VI1 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trim56Q80VI1 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trim56Q80VI1 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trim56Q80VI1 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trim56Q80VI1 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trim56Q80VI1 Gm42911-201ENSMUST00000199360 1630 ntBASIC23.24■■□□□ 1.31
Trim56Q80VI1 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trim56Q80VI1 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Trim56Q80VI1 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trim56Q80VI1 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trim56Q80VI1 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Trim56Q80VI1 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim56Q80VI1 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC23.23■■□□□ 1.31
Trim56Q80VI1 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Trim56Q80VI1 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim56Q80VI1 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim56Q80VI1 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC23.23■■□□□ 1.31
Trim56Q80VI1 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Trim56Q80VI1 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim56Q80VI1 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Trim56Q80VI1 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim56Q80VI1 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim56Q80VI1 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Trim56Q80VI1 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Trim56Q80VI1 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Trim56Q80VI1 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim56Q80VI1 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trim56Q80VI1 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim56Q80VI1 Gm10571-201ENSMUST00000097869 1638 ntBASIC23.2■■□□□ 1.3
Trim56Q80VI1 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim56Q80VI1 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trim56Q80VI1 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
Trim56Q80VI1 AC137127.1-201ENSMUST00000213466 1078 ntBASIC23.2■■□□□ 1.3
Trim56Q80VI1 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim56Q80VI1 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim56Q80VI1 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Gm34220-201ENSMUST00000223001 2709 ntBASIC23.19■■□□□ 1.3
Trim56Q80VI1 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC23.19■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms