Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ddx58Q6Q899 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Ddx58Q6Q899 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC24.42■■□□□ 1.5
Ddx58Q6Q899 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ddx58Q6Q899 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Ddx58Q6Q899 AA386476-201ENSMUST00000098781 1665 ntBASIC24.42■■□□□ 1.5
Ddx58Q6Q899 Gm42911-201ENSMUST00000199360 1630 ntBASIC24.42■■□□□ 1.5
Ddx58Q6Q899 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ddx58Q6Q899 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ddx58Q6Q899 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
Ddx58Q6Q899 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
Ddx58Q6Q899 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ddx58Q6Q899 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Ddx58Q6Q899 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Ddx58Q6Q899 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddx58Q6Q899 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddx58Q6Q899 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
Ddx58Q6Q899 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC24.4■■□□□ 1.5
Ddx58Q6Q899 AC154266.1-201ENSMUST00000223190 503 ntBASIC24.4■■□□□ 1.5
Ddx58Q6Q899 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddx58Q6Q899 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddx58Q6Q899 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddx58Q6Q899 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddx58Q6Q899 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Ddx58Q6Q899 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Ddx58Q6Q899 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
Ddx58Q6Q899 Reep4-203ENSMUST00000226563 1444 ntBASIC24.39■■□□□ 1.5
Ddx58Q6Q899 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC24.39■■□□□ 1.49
Ddx58Q6Q899 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Ddx58Q6Q899 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Ddx58Q6Q899 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
Ddx58Q6Q899 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddx58Q6Q899 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC24.38■■□□□ 1.49
Ddx58Q6Q899 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC24.38■■□□□ 1.49
Ddx58Q6Q899 Gm13234-201ENSMUST00000120010 747 ntBASIC24.38■■□□□ 1.49
Ddx58Q6Q899 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddx58Q6Q899 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC24.38■■□□□ 1.49
Ddx58Q6Q899 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddx58Q6Q899 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Ddx58Q6Q899 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddx58Q6Q899 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddx58Q6Q899 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ddx58Q6Q899 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ddx58Q6Q899 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Ddx58Q6Q899 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC24.37■■□□□ 1.49
Ddx58Q6Q899 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC24.37■■□□□ 1.49
Ddx58Q6Q899 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ddx58Q6Q899 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Ddx58Q6Q899 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Ddx58Q6Q899 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Ddx58Q6Q899 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC24.36■■□□□ 1.49
Ddx58Q6Q899 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC24.36■■□□□ 1.49
Ddx58Q6Q899 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ddx58Q6Q899 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC24.36■■□□□ 1.49
Ddx58Q6Q899 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Ddx58Q6Q899 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Ddx58Q6Q899 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Ddx58Q6Q899 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Ddx58Q6Q899 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Ddx58Q6Q899 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Ddx58Q6Q899 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Ddx58Q6Q899 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
Ddx58Q6Q899 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Ddx58Q6Q899 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC24.33■■□□□ 1.49
Ddx58Q6Q899 Gm37179-201ENSMUST00000194862 823 ntBASIC24.33■■□□□ 1.49
Ddx58Q6Q899 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Ddx58Q6Q899 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Ddx58Q6Q899 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
Ddx58Q6Q899 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC24.33■■□□□ 1.48
Ddx58Q6Q899 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC24.32■■□□□ 1.48
Ddx58Q6Q899 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Ddx58Q6Q899 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Ddx58Q6Q899 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Ddx58Q6Q899 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC24.32■■□□□ 1.48
Ddx58Q6Q899 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Ddx58Q6Q899 CT030146.1-201ENSMUST00000220919 217 ntBASIC24.32■■□□□ 1.48
Ddx58Q6Q899 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC24.32■■□□□ 1.48
Ddx58Q6Q899 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Ddx58Q6Q899 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Ddx58Q6Q899 Gm43909-201ENSMUST00000203443 1876 ntBASIC24.32■■□□□ 1.48
Ddx58Q6Q899 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Ddx58Q6Q899 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC24.3■■□□□ 1.48
Ddx58Q6Q899 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC24.3■■□□□ 1.48
Ddx58Q6Q899 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Ddx58Q6Q899 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Ddx58Q6Q899 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Ddx58Q6Q899 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Ddx58Q6Q899 Gm6277-202ENSMUST00000224036 2779 ntBASIC24.3■■□□□ 1.48
Ddx58Q6Q899 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Ddx58Q6Q899 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC24.29■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms