Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trav3-1Q5R1I8 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Gm37812-201ENSMUST00000195216 2475 ntBASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trav3-1Q5R1I8 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC13.38□□□□□ -0.27
Trav3-1Q5R1I8 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC13.38□□□□□ -0.27
Trav3-1Q5R1I8 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trav3-1Q5R1I8 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trav3-1Q5R1I8 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Trav3-1Q5R1I8 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC13.38□□□□□ -0.27
Trav3-1Q5R1I8 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trav3-1Q5R1I8 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Gm45244-201ENSMUST00000211328 2200 ntBASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Trav3-1Q5R1I8 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Trav3-1Q5R1I8 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 AC121598.2-201ENSMUST00000228376 2325 ntBASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Trav3-1Q5R1I8 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trav3-1Q5R1I8 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trav3-1Q5R1I8 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trav3-1Q5R1I8 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Trav3-1Q5R1I8 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trav3-1Q5R1I8 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trav3-1Q5R1I8 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Trav3-1Q5R1I8 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Trav3-1Q5R1I8 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms