Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col27a1Q5QNQ9 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col27a1Q5QNQ9 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col27a1Q5QNQ9 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Col27a1Q5QNQ9 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Col27a1Q5QNQ9 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col27a1Q5QNQ9 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col27a1Q5QNQ9 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Col27a1Q5QNQ9 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col27a1Q5QNQ9 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col27a1Q5QNQ9 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col27a1Q5QNQ9 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col27a1Q5QNQ9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col27a1Q5QNQ9 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col27a1Q5QNQ9 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col27a1Q5QNQ9 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col27a1Q5QNQ9 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col27a1Q5QNQ9 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Col27a1Q5QNQ9 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Col27a1Q5QNQ9 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Col27a1Q5QNQ9 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col27a1Q5QNQ9 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col27a1Q5QNQ9 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.39■□□□□ 0.7
Col27a1Q5QNQ9 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.39■□□□□ 0.69
Col27a1Q5QNQ9 Gm6576-201ENSMUST00000169678 883 ntBASIC19.39■□□□□ 0.69
Col27a1Q5QNQ9 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col27a1Q5QNQ9 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col27a1Q5QNQ9 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col27a1Q5QNQ9 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col27a1Q5QNQ9 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col27a1Q5QNQ9 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col27a1Q5QNQ9 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col27a1Q5QNQ9 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.38■□□□□ 0.69
Col27a1Q5QNQ9 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col27a1Q5QNQ9 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col27a1Q5QNQ9 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col27a1Q5QNQ9 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col27a1Q5QNQ9 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col27a1Q5QNQ9 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col27a1Q5QNQ9 Gm15565-201ENSMUST00000118890 427 ntBASIC19.37■□□□□ 0.69
Col27a1Q5QNQ9 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col27a1Q5QNQ9 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
Col27a1Q5QNQ9 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col27a1Q5QNQ9 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.36■□□□□ 0.69
Col27a1Q5QNQ9 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC19.36■□□□□ 0.69
Col27a1Q5QNQ9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col27a1Q5QNQ9 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col27a1Q5QNQ9 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col27a1Q5QNQ9 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col27a1Q5QNQ9 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col27a1Q5QNQ9 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col27a1Q5QNQ9 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.35■□□□□ 0.69
Col27a1Q5QNQ9 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col27a1Q5QNQ9 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col27a1Q5QNQ9 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Col27a1Q5QNQ9 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col27a1Q5QNQ9 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Col27a1Q5QNQ9 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Gm42911-201ENSMUST00000199360 1630 ntBASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col27a1Q5QNQ9 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col27a1Q5QNQ9 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.69
Col27a1Q5QNQ9 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col27a1Q5QNQ9 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Col27a1Q5QNQ9 Gm37055-201ENSMUST00000191866 133 ntBASIC19.33■□□□□ 0.69
Col27a1Q5QNQ9 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col27a1Q5QNQ9 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Col27a1Q5QNQ9 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Col27a1Q5QNQ9 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col27a1Q5QNQ9 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.32■□□□□ 0.68
Col27a1Q5QNQ9 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col27a1Q5QNQ9 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col27a1Q5QNQ9 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col27a1Q5QNQ9 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col27a1Q5QNQ9 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col27a1Q5QNQ9 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col27a1Q5QNQ9 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col27a1Q5QNQ9 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col27a1Q5QNQ9 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col27a1Q5QNQ9 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col27a1Q5QNQ9 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col27a1Q5QNQ9 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC19.31■□□□□ 0.68
Col27a1Q5QNQ9 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.31■□□□□ 0.68
Col27a1Q5QNQ9 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC19.31■□□□□ 0.68
Col27a1Q5QNQ9 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Gm11643-201ENSMUST00000119578 864 ntBASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 104.5 ms