Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Syne3Q4FZC9 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
Syne3Q4FZC9 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Syne3Q4FZC9 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.79■□□□□ 0.92
Syne3Q4FZC9 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.79■□□□□ 0.92
Syne3Q4FZC9 Mir6236-201ENSMUST00000184437 123 ntBASIC20.79■□□□□ 0.92
Syne3Q4FZC9 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Syne3Q4FZC9 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Syne3Q4FZC9 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne3Q4FZC9 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Syne3Q4FZC9 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Syne3Q4FZC9 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Syne3Q4FZC9 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.77■□□□□ 0.92
Syne3Q4FZC9 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Syne3Q4FZC9 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Syne3Q4FZC9 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.77■□□□□ 0.91
Syne3Q4FZC9 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Syne3Q4FZC9 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Syne3Q4FZC9 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Syne3Q4FZC9 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Syne3Q4FZC9 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Syne3Q4FZC9 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Syne3Q4FZC9 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Syne3Q4FZC9 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Syne3Q4FZC9 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Syne3Q4FZC9 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Syne3Q4FZC9 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.75■□□□□ 0.91
Syne3Q4FZC9 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Syne3Q4FZC9 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Syne3Q4FZC9 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Syne3Q4FZC9 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Syne3Q4FZC9 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Syne3Q4FZC9 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Syne3Q4FZC9 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Syne3Q4FZC9 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Syne3Q4FZC9 Gm43137-201ENSMUST00000198052 594 ntBASIC20.7■□□□□ 0.9
Syne3Q4FZC9 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Syne3Q4FZC9 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Syne3Q4FZC9 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms