Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col28a1Q2UY11 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col28a1Q2UY11 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col28a1Q2UY11 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.98■□□□□ 0.63
Col28a1Q2UY11 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col28a1Q2UY11 Gm9847-201ENSMUST00000052528 599 ntBASIC18.98■□□□□ 0.63
Col28a1Q2UY11 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col28a1Q2UY11 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col28a1Q2UY11 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.97■□□□□ 0.63
Col28a1Q2UY11 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.97■□□□□ 0.63
Col28a1Q2UY11 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col28a1Q2UY11 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Gm21956-201ENSMUST00000179946 522 ntBASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Col28a1Q2UY11 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col28a1Q2UY11 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col28a1Q2UY11 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col28a1Q2UY11 Gm22238-201ENSMUST00000175222 88 ntBASIC18.95■□□□□ 0.62
Col28a1Q2UY11 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col28a1Q2UY11 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col28a1Q2UY11 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col28a1Q2UY11 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Col28a1Q2UY11 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col28a1Q2UY11 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col28a1Q2UY11 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col28a1Q2UY11 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.92■□□□□ 0.62
Col28a1Q2UY11 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Golph3-205ENSMUST00000228671 2842 ntBASIC18.92■□□□□ 0.62
Col28a1Q2UY11 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Col28a1Q2UY11 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col28a1Q2UY11 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col28a1Q2UY11 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.91■□□□□ 0.62
Col28a1Q2UY11 Gm40881-201ENSMUST00000223397 166 ntBASIC18.91■□□□□ 0.62
Col28a1Q2UY11 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col28a1Q2UY11 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col28a1Q2UY11 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col28a1Q2UY11 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col28a1Q2UY11 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col28a1Q2UY11 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col28a1Q2UY11 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col28a1Q2UY11 Serp2-204ENSMUST00000228055 705 ntBASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 77.3 ms