Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Sox1P53783 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sox1P53783 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sox1P53783 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sox1P53783 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sox1P53783 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox1P53783 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox1P53783 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC20.25■□□□□ 0.83
Sox1P53783 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC20.25■□□□□ 0.83
Sox1P53783 Rab3c-203ENSMUST00000224180 967 ntBASIC20.25■□□□□ 0.83
Sox1P53783 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Sox1P53783 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.25■□□□□ 0.83
Sox1P53783 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox1P53783 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Sox1P53783 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox1P53783 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.24■□□□□ 0.83
Sox1P53783 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.24■□□□□ 0.83
Sox1P53783 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox1P53783 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Sox1P53783 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox1P53783 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
Sox1P53783 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Sox1P53783 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox1P53783 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox1P53783 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.23■□□□□ 0.83
Sox1P53783 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox1P53783 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox1P53783 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox1P53783 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sox1P53783 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Sox1P53783 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sox1P53783 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sox1P53783 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox1P53783 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Sox1P53783 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox1P53783 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox1P53783 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
Sox1P53783 Gm38205-201ENSMUST00000192243 258 ntBASIC20.22■□□□□ 0.83
Sox1P53783 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sox1P53783 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox1P53783 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.22■□□□□ 0.83
Sox1P53783 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Sox1P53783 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sox1P53783 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC20.21■□□□□ 0.83
Sox1P53783 Gm10231-201ENSMUST00000181584 441 ntBASIC20.21■□□□□ 0.83
Sox1P53783 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Sox1P53783 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sox1P53783 Gm10175-202ENSMUST00000208752 441 ntBASIC20.21■□□□□ 0.83
Sox1P53783 AC154649.1-201ENSMUST00000227392 384 ntBASIC20.21■□□□□ 0.83
Sox1P53783 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sox1P53783 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sox1P53783 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sox1P53783 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sox1P53783 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox1P53783 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Sox1P53783 AC153881.1-201ENSMUST00000214448 284 ntBASIC20.2■□□□□ 0.82
Sox1P53783 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox1P53783 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox1P53783 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox1P53783 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
Sox1P53783 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.19■□□□□ 0.82
Sox1P53783 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Sox1P53783 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox1P53783 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Sox1P53783 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC20.19■□□□□ 0.82
Sox1P53783 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.19■□□□□ 0.82
Sox1P53783 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
Sox1P53783 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.19■□□□□ 0.82
Sox1P53783 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox1P53783 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Sox1P53783 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Sox1P53783 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Sox1P53783 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sox1P53783 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sox1P53783 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sox1P53783 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox1P53783 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Sox1P53783 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC20.17■□□□□ 0.82
Sox1P53783 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox1P53783 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sox1P53783 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox1P53783 Gm7367-201ENSMUST00000057611 492 ntBASIC20.17■□□□□ 0.82
Sox1P53783 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC20.17■□□□□ 0.82
Sox1P53783 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sox1P53783 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sox1P53783 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Sox1P53783 Gm13534-201ENSMUST00000121169 513 ntBASIC20.16■□□□□ 0.82
Sox1P53783 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox1P53783 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox1P53783 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.16■□□□□ 0.82
Sox1P53783 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox1P53783 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Sox1P53783 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Sox1P53783 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox1P53783 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox1P53783 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Sox1P53783 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Sox1P53783 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Sox1P53783 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Sox1P53783 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms