Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC30.7■■■□□ 2.51
Cux1P53564 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC30.7■■■□□ 2.51
Cux1P53564 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Cux1P53564 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
Cux1P53564 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.5
Cux1P53564 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Cux1P53564 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC30.69■■■□□ 2.5
Cux1P53564 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC30.69■■■□□ 2.5
Cux1P53564 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC30.69■■■□□ 2.5
Cux1P53564 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Cux1P53564 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Cux1P53564 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC30.68■■■□□ 2.5
Cux1P53564 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
Cux1P53564 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
Cux1P53564 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
Cux1P53564 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC30.68■■■□□ 2.5
Cux1P53564 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC30.68■■■□□ 2.5
Cux1P53564 Gm6420-201ENSMUST00000193885 723 ntBASIC30.68■■■□□ 2.5
Cux1P53564 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cux1P53564 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Cux1P53564 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Cux1P53564 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Cux1P53564 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
Cux1P53564 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC30.67■■■□□ 2.5
Cux1P53564 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC30.67■■■□□ 2.5
Cux1P53564 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
Cux1P53564 Gm6211-202ENSMUST00000167849 925 ntBASIC30.66■■■□□ 2.5
Cux1P53564 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC30.66■■■□□ 2.5
Cux1P53564 Gm26524-201ENSMUST00000192339 390 ntBASIC30.66■■■□□ 2.5
Cux1P53564 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Cux1P53564 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Cux1P53564 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
Cux1P53564 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Cux1P53564 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
Cux1P53564 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC30.65■■■□□ 2.5
Cux1P53564 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Cux1P53564 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Cux1P53564 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
Cux1P53564 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Cux1P53564 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.5
Cux1P53564 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Cux1P53564 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Cux1P53564 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.49
Cux1P53564 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.49
Cux1P53564 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC30.63■■■□□ 2.49
Cux1P53564 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC30.63■■■□□ 2.49
Cux1P53564 Gm43909-201ENSMUST00000203443 1876 ntBASIC30.63■■■□□ 2.49
Cux1P53564 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Cux1P53564 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Cux1P53564 AC154266.1-201ENSMUST00000223190 503 ntBASIC30.63■■■□□ 2.49
Cux1P53564 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Cux1P53564 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
Cux1P53564 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Cux1P53564 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC30.62■■■□□ 2.49
Cux1P53564 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Cux1P53564 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC30.62■■■□□ 2.49
Cux1P53564 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
Cux1P53564 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Cux1P53564 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Cux1P53564 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC30.61■■■□□ 2.49
Cux1P53564 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
Cux1P53564 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
Cux1P53564 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Cux1P53564 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Cux1P53564 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Cux1P53564 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Cux1P53564 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
Cux1P53564 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Cux1P53564 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
Cux1P53564 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
Cux1P53564 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
Cux1P53564 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC30.6■■■□□ 2.49
Cux1P53564 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Cux1P53564 Dmtn-209ENSMUST00000228295 2572 ntBASIC30.59■■■□□ 2.49
Cux1P53564 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Cux1P53564 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Cux1P53564 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC30.59■■■□□ 2.49
Cux1P53564 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Cux1P53564 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
Cux1P53564 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Cux1P53564 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Cux1P53564 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
Cux1P53564 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Cux1P53564 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Cux1P53564 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Cux1P53564 Gm7290-201ENSMUST00000104990 617 ntBASIC30.58■■■□□ 2.49
Cux1P53564 Gm12918-201ENSMUST00000120234 636 ntBASIC30.58■■■□□ 2.49
Cux1P53564 Gm15710-201ENSMUST00000121821 636 ntBASIC30.58■■■□□ 2.49
Cux1P53564 Gm5075-201ENSMUST00000196916 622 ntBASIC30.58■■■□□ 2.49
Cux1P53564 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC30.58■■■□□ 2.49
Cux1P53564 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 12.4 ms