Protein–RNA interactions for Protein: P43680

Sox18, Transcription factor SOX-18, mousemouse

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox18P43680 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Sox18P43680 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Sox18P43680 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sox18P43680 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sox18P43680 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.85■□□□□ 0.61
Sox18P43680 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18.85■□□□□ 0.61
Sox18P43680 Gm44487-201ENSMUST00000205145 325 ntBASIC18.85■□□□□ 0.61
Sox18P43680 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sox18P43680 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Sox18P43680 Gm43859-201ENSMUST00000200075 1412 ntBASIC18.84■□□□□ 0.61
Sox18P43680 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC18.84■□□□□ 0.61
Sox18P43680 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Sox18P43680 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Sox18P43680 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sox18P43680 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sox18P43680 Gm13148-201ENSMUST00000118892 745 ntBASIC18.84■□□□□ 0.61
Sox18P43680 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC18.84■□□□□ 0.61
Sox18P43680 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.84■□□□□ 0.61
Sox18P43680 Gm20049-201ENSMUST00000219950 730 ntBASIC18.84■□□□□ 0.61
Sox18P43680 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sox18P43680 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sox18P43680 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Sox18P43680 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.84■□□□□ 0.61
Sox18P43680 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sox18P43680 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.83■□□□□ 0.61
Sox18P43680 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sox18P43680 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sox18P43680 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Sox18P43680 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Sox18P43680 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sox18P43680 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sox18P43680 AC130671.1-201ENSMUST00000227384 1237 ntBASIC18.83■□□□□ 0.6
Sox18P43680 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sox18P43680 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sox18P43680 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sox18P43680 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sox18P43680 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Sox18P43680 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Sox18P43680 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sox18P43680 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Sox18P43680 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sox18P43680 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Sox18P43680 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Sox18P43680 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sox18P43680 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Sox18P43680 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sox18P43680 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sox18P43680 Gm7290-201ENSMUST00000104990 617 ntBASIC18.81■□□□□ 0.6
Sox18P43680 Gm12918-201ENSMUST00000120234 636 ntBASIC18.81■□□□□ 0.6
Sox18P43680 Gm15710-201ENSMUST00000121821 636 ntBASIC18.81■□□□□ 0.6
Sox18P43680 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Sox18P43680 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.81■□□□□ 0.6
Sox18P43680 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.81■□□□□ 0.6
Sox18P43680 Gm5075-201ENSMUST00000196916 622 ntBASIC18.81■□□□□ 0.6
Sox18P43680 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Sox18P43680 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sox18P43680 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC18.81■□□□□ 0.6
Sox18P43680 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC18.81■□□□□ 0.6
Sox18P43680 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
Sox18P43680 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Sox18P43680 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.81■□□□□ 0.6
Sox18P43680 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sox18P43680 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sox18P43680 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
Sox18P43680 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Sox18P43680 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.8■□□□□ 0.6
Sox18P43680 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sox18P43680 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Sox18P43680 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sox18P43680 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox18P43680 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox18P43680 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Sox18P43680 Gm13836-201ENSMUST00000121159 501 ntBASIC18.79■□□□□ 0.6
Sox18P43680 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC18.79■□□□□ 0.6
Sox18P43680 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC18.79■□□□□ 0.6
Sox18P43680 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Sox18P43680 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC18.79■□□□□ 0.6
Sox18P43680 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox18P43680 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox18P43680 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox18P43680 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox18P43680 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox18P43680 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC18.78■□□□□ 0.6
Sox18P43680 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Sox18P43680 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.78■□□□□ 0.6
Sox18P43680 Gm13181-201ENSMUST00000120117 1069 ntBASIC18.78■□□□□ 0.6
Sox18P43680 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Sox18P43680 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC18.78■□□□□ 0.6
Sox18P43680 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox18P43680 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.78■□□□□ 0.6
Sox18P43680 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox18P43680 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Sox18P43680 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sox18P43680 Gm37856-201ENSMUST00000191634 999 ntBASIC18.77■□□□□ 0.6
Sox18P43680 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sox18P43680 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.77■□□□□ 0.6
Sox18P43680 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sox18P43680 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC18.77■□□□□ 0.6
Sox18P43680 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Sox18P43680 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms