Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox6P40645 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Sox6P40645 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox6P40645 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox6P40645 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Sox6P40645 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox6P40645 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox6P40645 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.34■□□□□ 0.53
Sox6P40645 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sox6P40645 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox6P40645 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.34■□□□□ 0.53
Sox6P40645 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox6P40645 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
Sox6P40645 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox6P40645 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox6P40645 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.34■□□□□ 0.53
Sox6P40645 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox6P40645 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.34■□□□□ 0.53
Sox6P40645 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Sox6P40645 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Sox6P40645 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.33■□□□□ 0.52
Sox6P40645 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox6P40645 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Sox6P40645 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox6P40645 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
Sox6P40645 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox6P40645 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
Sox6P40645 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox6P40645 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox6P40645 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Sox6P40645 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Sox6P40645 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox6P40645 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Sox6P40645 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.32■□□□□ 0.52
Sox6P40645 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.32■□□□□ 0.52
Sox6P40645 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.32■□□□□ 0.52
Sox6P40645 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox6P40645 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Sox6P40645 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox6P40645 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox6P40645 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Sox6P40645 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox6P40645 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Sox6P40645 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox6P40645 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox6P40645 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox6P40645 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Sox6P40645 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox6P40645 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Sox6P40645 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
Sox6P40645 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.31■□□□□ 0.52
Sox6P40645 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.31■□□□□ 0.52
Sox6P40645 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC18.31■□□□□ 0.52
Sox6P40645 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC18.31■□□□□ 0.52
Sox6P40645 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
Sox6P40645 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox6P40645 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox6P40645 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox6P40645 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox6P40645 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox6P40645 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox6P40645 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox6P40645 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Sox6P40645 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox6P40645 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox6P40645 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Sox6P40645 Gm7143-201ENSMUST00000222811 859 ntBASIC18.3■□□□□ 0.52
Sox6P40645 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Sox6P40645 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox6P40645 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox6P40645 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox6P40645 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Sox6P40645 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox6P40645 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Sox6P40645 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sox6P40645 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sox6P40645 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.29■□□□□ 0.52
Sox6P40645 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox6P40645 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Sox6P40645 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox6P40645 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.29■□□□□ 0.52
Sox6P40645 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.28■□□□□ 0.52
Sox6P40645 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Gm9870-201ENSMUST00000063874 645 ntBASIC18.28■□□□□ 0.52
Sox6P40645 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
Sox6P40645 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Sox6P40645 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.27■□□□□ 0.52
Sox6P40645 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Sox6P40645 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.27■□□□□ 0.52
Sox6P40645 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms