Protein–RNA interactions for Protein: P09631

Hoxa9, Homeobox protein Hox-A9, mousemouse

Predictions only

Length 271 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa9P09631 Gm9988-201ENSMUST00000069786 435 ntBASIC19.79■□□□□ 0.76
Hoxa9P09631 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hoxa9P09631 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hoxa9P09631 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hoxa9P09631 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Hoxa9P09631 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.78■□□□□ 0.76
Hoxa9P09631 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hoxa9P09631 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.78■□□□□ 0.76
Hoxa9P09631 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.78■□□□□ 0.76
Hoxa9P09631 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hoxa9P09631 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hoxa9P09631 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxa9P09631 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
Hoxa9P09631 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxa9P09631 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Hoxa9P09631 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxa9P09631 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Hoxa9P09631 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxa9P09631 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Hoxa9P09631 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.77■□□□□ 0.76
Hoxa9P09631 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxa9P09631 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxa9P09631 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Hoxa9P09631 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxa9P09631 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxa9P09631 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxa9P09631 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hoxa9P09631 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hoxa9P09631 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hoxa9P09631 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hoxa9P09631 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hoxa9P09631 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.76■□□□□ 0.75
Hoxa9P09631 Gm13234-201ENSMUST00000120010 747 ntBASIC19.76■□□□□ 0.75
Hoxa9P09631 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.76■□□□□ 0.75
Hoxa9P09631 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hoxa9P09631 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC19.76■□□□□ 0.75
Hoxa9P09631 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hoxa9P09631 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hoxa9P09631 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hoxa9P09631 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hoxa9P09631 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.75■□□□□ 0.75
Hoxa9P09631 Gm12933-201ENSMUST00000120203 872 ntBASIC19.75■□□□□ 0.75
Hoxa9P09631 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hoxa9P09631 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
Hoxa9P09631 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC19.75■□□□□ 0.75
Hoxa9P09631 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hoxa9P09631 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hoxa9P09631 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Hoxa9P09631 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Hoxa9P09631 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.74■□□□□ 0.75
Hoxa9P09631 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
Hoxa9P09631 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.74■□□□□ 0.75
Hoxa9P09631 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxa9P09631 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxa9P09631 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Hoxa9P09631 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxa9P09631 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxa9P09631 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19.73■□□□□ 0.75
Hoxa9P09631 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.73■□□□□ 0.75
Hoxa9P09631 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxa9P09631 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxa9P09631 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxa9P09631 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxa9P09631 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxa9P09631 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxa9P09631 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hoxa9P09631 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Hoxa9P09631 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hoxa9P09631 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hoxa9P09631 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.72■□□□□ 0.75
Hoxa9P09631 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Hoxa9P09631 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC19.72■□□□□ 0.75
Hoxa9P09631 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hoxa9P09631 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hoxa9P09631 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hoxa9P09631 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hoxa9P09631 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Hoxa9P09631 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hoxa9P09631 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hoxa9P09631 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.71■□□□□ 0.75
Hoxa9P09631 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hoxa9P09631 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hoxa9P09631 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Hoxa9P09631 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
Hoxa9P09631 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hoxa9P09631 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hoxa9P09631 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hoxa9P09631 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hoxa9P09631 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms