Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.93■□□□□ 0.94
TnfP06804 Gm42569-201ENSMUST00000200539 472 ntBASIC20.93■□□□□ 0.94
TnfP06804 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TnfP06804 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TnfP06804 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TnfP06804 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TnfP06804 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TnfP06804 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TnfP06804 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TnfP06804 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
TnfP06804 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TnfP06804 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TnfP06804 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TnfP06804 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.92■□□□□ 0.94
TnfP06804 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TnfP06804 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.92■□□□□ 0.94
TnfP06804 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TnfP06804 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TnfP06804 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TnfP06804 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TnfP06804 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.91■□□□□ 0.94
TnfP06804 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
TnfP06804 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TnfP06804 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.91■□□□□ 0.94
TnfP06804 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TnfP06804 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TnfP06804 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TnfP06804 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
TnfP06804 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TnfP06804 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
TnfP06804 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
TnfP06804 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TnfP06804 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.9■□□□□ 0.94
TnfP06804 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TnfP06804 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TnfP06804 Gm18671-201ENSMUST00000214826 683 ntBASIC20.9■□□□□ 0.94
TnfP06804 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TnfP06804 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TnfP06804 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TnfP06804 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TnfP06804 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TnfP06804 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TnfP06804 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TnfP06804 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.89■□□□□ 0.93
TnfP06804 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TnfP06804 AA386476-201ENSMUST00000098781 1665 ntBASIC20.89■□□□□ 0.93
TnfP06804 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
TnfP06804 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TnfP06804 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TnfP06804 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.88■□□□□ 0.93
TnfP06804 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
TnfP06804 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
TnfP06804 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TnfP06804 Gm7291-201ENSMUST00000199147 382 ntBASIC20.88■□□□□ 0.93
TnfP06804 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.88■□□□□ 0.93
TnfP06804 Gm10033-202ENSMUST00000211874 928 ntBASIC20.88■□□□□ 0.93
TnfP06804 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TnfP06804 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TnfP06804 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TnfP06804 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.87■□□□□ 0.93
TnfP06804 Gm10849-201ENSMUST00000100397 618 ntBASIC20.87■□□□□ 0.93
TnfP06804 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.87■□□□□ 0.93
TnfP06804 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TnfP06804 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.87■□□□□ 0.93
TnfP06804 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
TnfP06804 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.86■□□□□ 0.93
TnfP06804 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
TnfP06804 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC20.86■□□□□ 0.93
TnfP06804 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TnfP06804 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
TnfP06804 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TnfP06804 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TnfP06804 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TnfP06804 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.85■□□□□ 0.93
TnfP06804 Gm27405-201ENSMUST00000184201 112 ntBASIC20.85■□□□□ 0.93
TnfP06804 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.85■□□□□ 0.93
TnfP06804 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.85■□□□□ 0.93
TnfP06804 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TnfP06804 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TnfP06804 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
TnfP06804 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TnfP06804 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.84■□□□□ 0.93
TnfP06804 AV356131-201ENSMUST00000206201 750 ntBASIC20.84■□□□□ 0.93
TnfP06804 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
TnfP06804 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
TnfP06804 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TnfP06804 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.84■□□□□ 0.93
TnfP06804 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TnfP06804 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TnfP06804 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms