Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
Col4a1P02463 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC24.61■■□□□ 1.53
Col4a1P02463 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC24.61■■□□□ 1.53
Col4a1P02463 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Col4a1P02463 Gm10602-201ENSMUST00000098239 609 ntBASIC24.6■■□□□ 1.53
Col4a1P02463 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Col4a1P02463 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Col4a1P02463 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Col4a1P02463 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Col4a1P02463 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Col4a1P02463 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Col4a1P02463 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Col4a1P02463 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Col4a1P02463 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Col4a1P02463 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Col4a1P02463 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Col4a1P02463 Gm37035-201ENSMUST00000194809 2148 ntBASIC24.59■■□□□ 1.53
Col4a1P02463 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC24.58■■□□□ 1.53
Col4a1P02463 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Col4a1P02463 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
Col4a1P02463 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC24.58■■□□□ 1.53
Col4a1P02463 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC24.58■■□□□ 1.53
Col4a1P02463 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Col4a1P02463 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Col4a1P02463 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Col4a1P02463 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC24.58■■□□□ 1.53
Col4a1P02463 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Col4a1P02463 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
Col4a1P02463 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Col4a1P02463 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Col4a1P02463 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Col4a1P02463 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col4a1P02463 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col4a1P02463 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col4a1P02463 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC24.56■■□□□ 1.52
Col4a1P02463 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col4a1P02463 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Col4a1P02463 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col4a1P02463 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC24.56■■□□□ 1.52
Col4a1P02463 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
Col4a1P02463 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col4a1P02463 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col4a1P02463 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
Col4a1P02463 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
Col4a1P02463 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Col4a1P02463 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Col4a1P02463 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Col4a1P02463 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Col4a1P02463 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
Col4a1P02463 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
Col4a1P02463 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Col4a1P02463 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Col4a1P02463 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Col4a1P02463 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Col4a1P02463 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Col4a1P02463 Gm43909-201ENSMUST00000203443 1876 ntBASIC24.53■■□□□ 1.52
Col4a1P02463 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Col4a1P02463 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Col4a1P02463 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Col4a1P02463 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
Col4a1P02463 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Col4a1P02463 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Col4a1P02463 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC24.53■■□□□ 1.52
Col4a1P02463 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Col4a1P02463 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Col4a1P02463 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Col4a1P02463 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC24.53■■□□□ 1.52
Col4a1P02463 Gm4968-201ENSMUST00000071458 858 ntBASIC24.53■■□□□ 1.52
Col4a1P02463 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Col4a1P02463 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Col4a1P02463 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Col4a1P02463 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Col4a1P02463 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC24.52■■□□□ 1.52
Col4a1P02463 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Col4a1P02463 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Col4a1P02463 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Col4a1P02463 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC24.51■■□□□ 1.51
Col4a1P02463 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Col4a1P02463 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC24.51■■□□□ 1.51
Col4a1P02463 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC24.5■■□□□ 1.51
Col4a1P02463 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC24.5■■□□□ 1.51
Col4a1P02463 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC24.5■■□□□ 1.51
Col4a1P02463 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC24.5■■□□□ 1.51
Col4a1P02463 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Col4a1P02463 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Col4a1P02463 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Col4a1P02463 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
Col4a1P02463 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Col4a1P02463 Gm12441-201ENSMUST00000121806 588 ntBASIC24.5■■□□□ 1.51
Col4a1P02463 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Col4a1P02463 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Col4a1P02463 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
Col4a1P02463 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Col4a1P02463 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Col4a1P02463 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Col4a1P02463 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Col4a1P02463 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Col4a1P02463 Cdkn3-203ENSMUST00000227149 1952 ntBASIC24.49■■□□□ 1.51
Col4a1P02463 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Col4a1P02463 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms