Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd6A3KFM7 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd6A3KFM7 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd6A3KFM7 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Chd6A3KFM7 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd6A3KFM7 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd6A3KFM7 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd6A3KFM7 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.23■□□□□ 0.19
Chd6A3KFM7 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Gm17971-201ENSMUST00000190239 806 ntBASIC16.23■□□□□ 0.19
Chd6A3KFM7 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd6A3KFM7 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd6A3KFM7 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd6A3KFM7 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd6A3KFM7 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd6A3KFM7 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd6A3KFM7 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Chd6A3KFM7 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC16.21■□□□□ 0.19
Chd6A3KFM7 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd6A3KFM7 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd6A3KFM7 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd6A3KFM7 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Chd6A3KFM7 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Chd6A3KFM7 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
Chd6A3KFM7 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd6A3KFM7 Gm12896-201ENSMUST00000118430 226 ntBASIC16.2■□□□□ 0.18
Chd6A3KFM7 Gm13146-201ENSMUST00000118508 780 ntBASIC16.2■□□□□ 0.18
Chd6A3KFM7 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC16.2■□□□□ 0.18
Chd6A3KFM7 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Chd6A3KFM7 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC16.2■□□□□ 0.18
Chd6A3KFM7 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd6A3KFM7 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.2■□□□□ 0.18
Chd6A3KFM7 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC16.2■□□□□ 0.18
Chd6A3KFM7 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd6A3KFM7 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd6A3KFM7 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd6A3KFM7 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
Chd6A3KFM7 Gm37563-201ENSMUST00000192580 1513 ntBASIC16.19■□□□□ 0.18
Chd6A3KFM7 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd6A3KFM7 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd6A3KFM7 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd6A3KFM7 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd6A3KFM7 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.19■□□□□ 0.18
Chd6A3KFM7 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd6A3KFM7 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Chd6A3KFM7 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Chd6A3KFM7 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd6A3KFM7 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Gm8668-201ENSMUST00000120559 1447 ntBASIC16.18■□□□□ 0.18
Chd6A3KFM7 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd6A3KFM7 Gm7461-201ENSMUST00000058918 827 ntBASIC16.18■□□□□ 0.18
Chd6A3KFM7 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd6A3KFM7 Gm10167-201ENSMUST00000150411 1479 ntBASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms