Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Golgb1-201ENSMUST00000023534 498 ntBASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav1A0A075B5Z4 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav1A0A075B5Z4 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav1A0A075B5Z4 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav1A0A075B5Z4 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav1A0A075B5Z4 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav1A0A075B5Z4 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.27■□□□□ 0.52
Trav1A0A075B5Z4 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav1A0A075B5Z4 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav1A0A075B5Z4 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trav1A0A075B5Z4 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Trav1A0A075B5Z4 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trav1A0A075B5Z4 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav1A0A075B5Z4 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav1A0A075B5Z4 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav1A0A075B5Z4 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.24■□□□□ 0.51
Trav1A0A075B5Z4 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav1A0A075B5Z4 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav1A0A075B5Z4 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav1A0A075B5Z4 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Trav1A0A075B5Z4 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav1A0A075B5Z4 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.24■□□□□ 0.51
Trav1A0A075B5Z4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav1A0A075B5Z4 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav1A0A075B5Z4 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav1A0A075B5Z4 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav1A0A075B5Z4 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.23■□□□□ 0.51
Trav1A0A075B5Z4 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav1A0A075B5Z4 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav1A0A075B5Z4 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav1A0A075B5Z4 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav1A0A075B5Z4 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
Trav1A0A075B5Z4 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trav1A0A075B5Z4 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav1A0A075B5Z4 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav1A0A075B5Z4 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav1A0A075B5Z4 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav1A0A075B5Z4 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav1A0A075B5Z4 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Trav1A0A075B5Z4 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav1A0A075B5Z4 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Trav1A0A075B5Z4 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav1A0A075B5Z4 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.19■□□□□ 0.5
Trav1A0A075B5Z4 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav1A0A075B5Z4 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Trav1A0A075B5Z4 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trav1A0A075B5Z4 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav1A0A075B5Z4 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms