Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Akap3-203ENSMUST00000202878 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Gpatch4-202ENSMUST00000166021 1768 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Cux1P53564 Aqr-202ENSMUST00000102543 4352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Gm3126-201ENSMUST00000216513 1468 ntBASIC15.23■□□□□ 0.03
Cux1P53564 Trpv5-202ENSMUST00000193503 2025 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Cux1P53564 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Nrbp2-201ENSMUST00000019516 2495 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Sap130-202ENSMUST00000178164 4030 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Cux1P53564 Gm12966-201ENSMUST00000118024 810 ntBASIC15.23■□□□□ 0.03
Cux1P53564 Zfp740-205ENSMUST00000121206 795 ntTSL 3 BASIC15.23■□□□□ 0.03
Cux1P53564 Gm5776-201ENSMUST00000122119 321 ntBASIC15.23■□□□□ 0.03
Cux1P53564 Gm16337-201ENSMUST00000160368 917 ntTSL 3 BASIC15.23■□□□□ 0.03
Cux1P53564 Gm17169-201ENSMUST00000171382 351 ntBASIC15.23■□□□□ 0.03
Cux1P53564 Gm9711-201ENSMUST00000208857 327 ntBASIC15.23■□□□□ 0.03
Cux1P53564 Gm32856-202ENSMUST00000212180 1134 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 AC165159.2-201ENSMUST00000224080 441 ntBASIC15.23■□□□□ 0.03
Cux1P53564 Yipf7-201ENSMUST00000031045 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Gm5535-201ENSMUST00000099292 1743 ntTSL 2 BASIC15.23■□□□□ 0.03
Cux1P53564 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Cux1P53564 Scamp1-203ENSMUST00000152555 1877 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Rint1-201ENSMUST00000030852 3298 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Olfr1283-203ENSMUST00000216637 1689 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Cux1P53564 Ssb-201ENSMUST00000090852 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Brat1-202ENSMUST00000100505 3431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Cux1P53564 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Cux1P53564 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Gdi2-201ENSMUST00000059515 2077 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Gm10741-201ENSMUST00000218151 1748 ntBASIC15.23■□□□□ 0.03
Cux1P53564 Rab2b-201ENSMUST00000022765 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cux1P53564 Mir681-201ENSMUST00000102111 110 ntBASIC15.22■□□□□ 0.03
Cux1P53564 Defa-ps16-201ENSMUST00000121939 171 ntBASIC15.22■□□□□ 0.03
Cux1P53564 Gm11520-201ENSMUST00000122837 630 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Snhg7os-201ENSMUST00000126798 546 ntTSL 5 BASIC15.22■□□□□ 0.03
Cux1P53564 Gm11827-201ENSMUST00000142297 1257 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Gm12061-201ENSMUST00000151881 479 ntTSL 3 BASIC15.22■□□□□ 0.03
Cux1P53564 Gstm5-204ENSMUST00000169365 810 ntTSL 2 BASIC15.22■□□□□ 0.03
Cux1P53564 Nrxn1-214ENSMUST00000173222 859 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Gm37012-201ENSMUST00000194991 1078 ntBASIC15.22■□□□□ 0.03
Cux1P53564 E330011O21Rik-201ENSMUST00000209468 1107 ntTSL 5 BASIC15.22■□□□□ 0.03
Cux1P53564 Gm18942-201ENSMUST00000213578 1121 ntBASIC15.22■□□□□ 0.03
Cux1P53564 Pqbp1-201ENSMUST00000033497 1104 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Ifnb1-201ENSMUST00000055671 750 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Cux1P53564 4930533K18Rik-201ENSMUST00000058942 1259 ntTSL 5 BASIC15.22■□□□□ 0.03
Cux1P53564 Gm22054-201ENSMUST00000083395 155 ntBASIC15.22■□□□□ 0.03
Cux1P53564 Olfr1264-201ENSMUST00000099758 927 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Cux1P53564 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Cux1P53564 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Gm16291-201ENSMUST00000147378 2594 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Cux1P53564 Auts2-209ENSMUST00000161804 5392 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Gm16063-201ENSMUST00000156235 1701 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC15.22■□□□□ 0.03
Cux1P53564 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 B630019A10Rik-201ENSMUST00000149488 2407 ntTSL 2 BASIC15.22■□□□□ 0.03
Cux1P53564 Gm14461-201ENSMUST00000067618 1780 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 1700018A04Rik-204ENSMUST00000221561 2569 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Nupl1-202ENSMUST00000041905 3913 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Sertm1-202ENSMUST00000162201 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Cdkl1-201ENSMUST00000021377 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cux1P53564 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cux1P53564 Gm22881-201ENSMUST00000157747 134 ntBASIC15.22■□□□□ 0.03
Cux1P53564 Gm17228-201ENSMUST00000165006 491 ntBASIC15.22■□□□□ 0.03
Cux1P53564 Gm44331-201ENSMUST00000203217 388 ntBASIC15.22■□□□□ 0.03
Cux1P53564 AC162893.1-201ENSMUST00000207732 1085 ntBASIC15.22■□□□□ 0.03
Cux1P53564 Gm10229-201ENSMUST00000089106 570 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Cux1P53564 Gm9466-201ENSMUST00000218144 2246 ntBASIC15.22■□□□□ 0.03
Cux1P53564 Gm10093-201ENSMUST00000079363 1977 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Cux1P53564 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cux1P53564 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Cux1P53564 Gm40634-201ENSMUST00000214129 2001 ntTSL 5 BASIC15.21■□□□□ 0.03
Cux1P53564 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cux1P53564 AC125223.2-202ENSMUST00000225020 4103 ntBASIC15.21■□□□□ 0.03
Cux1P53564 Fcgr2b-202ENSMUST00000081103 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cux1P53564 Osbpl3-203ENSMUST00000114466 2916 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Cux1P53564 Spocd1-201ENSMUST00000084263 3096 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Cux1P53564 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cux1P53564 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC15.21■□□□□ 0.03
Cux1P53564 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Cux1P53564 Ccdc141-203ENSMUST00000111833 631 ntTSL 2 BASIC15.21■□□□□ 0.03
Cux1P53564 Gm11605-201ENSMUST00000120413 646 ntBASIC15.21■□□□□ 0.03
Cux1P53564 3110056K07Rik-201ENSMUST00000127129 722 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cux1P53564 Gm11431-201ENSMUST00000155046 428 ntTSL 3 BASIC15.21■□□□□ 0.03
Cux1P53564 Gzmg-201ENSMUST00000015578 909 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cux1P53564 Gm8488-201ENSMUST00000176112 1280 ntBASIC15.21■□□□□ 0.03
Cux1P53564 Gm37759-201ENSMUST00000194155 3246 ntBASIC15.21■□□□□ 0.03
Cux1P53564 Gm43787-201ENSMUST00000197792 1037 ntBASIC15.21■□□□□ 0.03
Cux1P53564 1700063D05Rik-204ENSMUST00000213914 1007 ntTSL 5 BASIC15.21■□□□□ 0.03
Cux1P53564 Cpsf3-211ENSMUST00000222968 1858 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cux1P53564 Eras-201ENSMUST00000033500 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cux1P53564 Snora43-201ENSMUST00000082924 127 ntBASIC15.21■□□□□ 0.03
Cux1P53564 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Cux1P53564 Ptpre-205ENSMUST00000210833 2209 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms