Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Traf1P39428 Gm5561-201ENSMUST00000178932 480 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Gm3534-201ENSMUST00000182522 1001 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Gm38309-201ENSMUST00000192063 1518 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Gm37144-201ENSMUST00000195445 1150 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Gm31466-201ENSMUST00000195457 916 ntTSL 3 BASIC11.73□□□□□ -0.53
Traf1P39428 Arfgef3-201ENSMUST00000019999 5606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Gm44236-201ENSMUST00000204492 513 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Gm44204-201ENSMUST00000204722 737 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Cyp26b1-205ENSMUST00000205228 4288 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 4931431B13Rik-202ENSMUST00000205646 473 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Gm5130-201ENSMUST00000210233 959 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Hdac9-208ENSMUST00000211107 1683 ntTSL 5 BASIC11.73□□□□□ -0.53
Traf1P39428 Thyn1-202ENSMUST00000213683 1107 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Traf1P39428 Gm46329-201ENSMUST00000218373 609 ntTSL 5 BASIC11.73□□□□□ -0.53
Traf1P39428 CT009713.3-201ENSMUST00000224987 1565 ntBASIC11.73□□□□□ -0.53
Traf1P39428 AC102523.2-201ENSMUST00000227813 983 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Tmem184b-205ENSMUST00000228002 3315 ntBASIC11.73□□□□□ -0.53
Traf1P39428 AC123533.3-201ENSMUST00000228056 454 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Lep-201ENSMUST00000069789 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Speer4c-201ENSMUST00000095005 1159 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Speer4d-201ENSMUST00000095006 1194 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Wdr62-201ENSMUST00000108190 4742 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Traf1P39428 Gm7357-201ENSMUST00000195361 2991 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Anks1b-203ENSMUST00000099368 2799 ntTSL 5 BASIC11.73□□□□□ -0.53
Traf1P39428 Cfb-201ENSMUST00000025229 2737 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Hnrnpk-216ENSMUST00000177019 2626 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Zfp940-202ENSMUST00000108223 2560 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Trim34a-201ENSMUST00000060315 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Sh3bgrl2-203ENSMUST00000188030 2549 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Zfp873-203ENSMUST00000209622 2284 ntTSL 2 BASIC11.72□□□□□ -0.53
Traf1P39428 Ces1a-201ENSMUST00000095211 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Clgn-201ENSMUST00000002259 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Zfp217-201ENSMUST00000063710 5685 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Wnt5a-202ENSMUST00000112272 3650 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Il7-204ENSMUST00000194184 1785 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Gm45895-201ENSMUST00000212248 1697 ntTSL 5 BASIC11.72□□□□□ -0.53
Traf1P39428 Mepe-201ENSMUST00000066207 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Loxl3-202ENSMUST00000101257 3252 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Tmbim7-201ENSMUST00000014673 1552 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Pcdhb9-201ENSMUST00000057228 3055 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Traf1P39428 Clec14a-201ENSMUST00000062254 4571 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Traf1P39428 Zeb2os-201ENSMUST00000127150 1305 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Cdcp2-201ENSMUST00000062495 2611 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Gm13547-202ENSMUST00000113810 629 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Gm13281-201ENSMUST00000120871 567 ntBASIC11.72□□□□□ -0.53
Traf1P39428 Gm16193-201ENSMUST00000125903 778 ntTSL 3 BASIC11.72□□□□□ -0.53
Traf1P39428 Gm13898-201ENSMUST00000141865 610 ntBASIC11.72□□□□□ -0.53
Traf1P39428 Gm5627-201ENSMUST00000178539 931 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Gm26594-201ENSMUST00000180383 1094 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Mir6396-201ENSMUST00000183603 111 ntBASIC11.72□□□□□ -0.53
Traf1P39428 Gm19412-201ENSMUST00000185388 436 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Gm21631-201ENSMUST00000195041 754 ntBASIC11.72□□□□□ -0.53
Traf1P39428 Gm43866-201ENSMUST00000203894 839 ntBASIC11.72□□□□□ -0.53
Traf1P39428 Gm45040-201ENSMUST00000207742 578 ntTSL 3 BASIC11.72□□□□□ -0.53
Traf1P39428 Cyp2e1-203ENSMUST00000210235 1012 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Gm46349-201ENSMUST00000219678 917 ntTSL 5 BASIC11.72□□□□□ -0.53
Traf1P39428 Izumo1r-202ENSMUST00000069408 1172 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Vipas39-202ENSMUST00000072744 2524 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Olfr169-203ENSMUST00000215476 2476 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Traf1P39428 Pif1-201ENSMUST00000047099 3685 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Kalrn-205ENSMUST00000114953 4722 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Gpatch1-201ENSMUST00000079693 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Dhx34-204ENSMUST00000121123 3880 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Traf1P39428 Gm28635-201ENSMUST00000189772 4734 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Traf1P39428 Papss1-206ENSMUST00000200527 2811 ntTSL 5 BASIC11.72□□□□□ -0.53
Traf1P39428 Cyp2b13-201ENSMUST00000005669 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Zbtb25-202ENSMUST00000176102 2707 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Traf1P39428 Mlxipl-201ENSMUST00000005507 3622 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Morf4l2-215ENSMUST00000169418 1782 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Traf1P39428 Tbl3-202ENSMUST00000126319 5226 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Traf1P39428 Prdm1-202ENSMUST00000105490 4025 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Gm45889-202ENSMUST00000211255 2358 ntTSL 5 BASIC11.71□□□□□ -0.53
Traf1P39428 Wdr20rt-202ENSMUST00000221658 1570 ntTSL 5 BASIC11.71□□□□□ -0.53
Traf1P39428 Spata31d1a-203ENSMUST00000224982 5325 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Traf1P39428 Trem1-201ENSMUST00000048782 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Atad5-202ENSMUST00000108239 7266 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Traf1P39428 Gm38054-201ENSMUST00000192380 2167 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 4930432K21Rik-201ENSMUST00000093375 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Gm10417-201ENSMUST00000194341 3522 ntBASIC11.71□□□□□ -0.53
Traf1P39428 Fut8-202ENSMUST00000171770 2765 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Cr1l-204ENSMUST00000193094 2776 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Trpm5-201ENSMUST00000009390 4123 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Myo9a-205ENSMUST00000135298 12198 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Traf1P39428 Ppp2r2a-201ENSMUST00000089230 4010 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Kcne4-201ENSMUST00000057262 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Cx3cl1-201ENSMUST00000034230 3315 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Mrps33-202ENSMUST00000114797 500 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Olfr333-ps1-201ENSMUST00000122311 940 ntBASIC11.71□□□□□ -0.53
Traf1P39428 Gm11655-201ENSMUST00000153899 765 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 2410124H12Rik-201ENSMUST00000160494 706 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Gm4462-201ENSMUST00000166453 492 ntBASIC11.71□□□□□ -0.53
Traf1P39428 Rps28-205ENSMUST00000173844 382 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Gsdmcl2-202ENSMUST00000185391 796 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Gm3052-201ENSMUST00000186409 829 ntBASIC11.71□□□□□ -0.53
Traf1P39428 Spin3-ps-201ENSMUST00000192825 770 ntBASIC11.71□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms