Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC9.68□□□□□ -0.86
Cdx2P43241 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Sfi1-202ENSMUST00000081318 3969 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Plpbp-203ENSMUST00000209525 5767 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Cyp2c44-201ENSMUST00000026211 1916 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Metap1-203ENSMUST00000197531 3708 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Pcdhb20-201ENSMUST00000052179 3559 ntAPPRIS P1 BASIC9.68□□□□□ -0.86
Cdx2P43241 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Gm9992-201ENSMUST00000070059 1593 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Atp13a4-201ENSMUST00000039090 2878 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Cd177-201ENSMUST00000063956 2714 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Ighv6-3-201ENSMUST00000103486 356 ntAPPRIS P1 BASIC9.68□□□□□ -0.86
Cdx2P43241 Ighv6-6-201ENSMUST00000103489 357 ntAPPRIS P1 BASIC9.68□□□□□ -0.86
Cdx2P43241 Gm12168-201ENSMUST00000119051 368 ntBASIC9.68□□□□□ -0.86
Cdx2P43241 Gm15285-201ENSMUST00000119271 473 ntBASIC9.68□□□□□ -0.86
Cdx2P43241 Gm13071-201ENSMUST00000122237 376 ntBASIC9.68□□□□□ -0.86
Cdx2P43241 Katnal2-203ENSMUST00000123650 638 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Gm12679-201ENSMUST00000123899 636 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Gm26483-201ENSMUST00000158016 104 ntBASIC9.68□□□□□ -0.86
Cdx2P43241 Gm7583-201ENSMUST00000182941 1005 ntBASIC9.68□□□□□ -0.86
Cdx2P43241 Etv3l-201ENSMUST00000193196 325 ntBASIC9.68□□□□□ -0.86
Cdx2P43241 Gm5684-201ENSMUST00000198419 961 ntBASIC9.68□□□□□ -0.86
Cdx2P43241 Gm44920-201ENSMUST00000206503 746 ntTSL 5 BASIC9.68□□□□□ -0.86
Cdx2P43241 Sparc-208ENSMUST00000214685 1269 ntAPPRIS P3 TSL 5 BASIC9.68□□□□□ -0.86
Cdx2P43241 Gm5951-201ENSMUST00000220283 504 ntBASIC9.68□□□□□ -0.86
Cdx2P43241 Gm6353-201ENSMUST00000223234 1051 ntBASIC9.68□□□□□ -0.86
Cdx2P43241 Sh2d1a-201ENSMUST00000005839 883 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Sh2d6-201ENSMUST00000089687 1162 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Cdx2P43241 1700029F12Rik-201ENSMUST00000091377 1128 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Myh1-202ENSMUST00000075734 6012 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 2900011O08Rik-201ENSMUST00000056521 2394 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Rpgr-202ENSMUST00000072393 2380 ntAPPRIS ALT2 TSL 2 BASIC9.68□□□□□ -0.86
Cdx2P43241 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
Cdx2P43241 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
Cdx2P43241 Cit-212ENSMUST00000141101 6794 ntTSL 5 BASIC9.68□□□□□ -0.86
Cdx2P43241 Prss23-204ENSMUST00000207932 1937 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Srrm4-201ENSMUST00000076124 7472 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Dido1-204ENSMUST00000103055 4613 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC9.68□□□□□ -0.86
Cdx2P43241 Snapc1-201ENSMUST00000021532 6275 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Brat1-202ENSMUST00000100505 3431 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx2P43241 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC9.67□□□□□ -0.86
Cdx2P43241 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 March10-201ENSMUST00000049995 3074 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
Cdx2P43241 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Zfp74-204ENSMUST00000108212 2060 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Phactr1-214ENSMUST00000149235 2076 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
Cdx2P43241 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 AC139845.1-201ENSMUST00000147013 1334 ntTSL 5 BASIC9.67□□□□□ -0.86
Cdx2P43241 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
Cdx2P43241 Sh3glb1-204ENSMUST00000199531 2584 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Cox4i2-202ENSMUST00000109821 733 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm15353-201ENSMUST00000110860 702 ntTSL 5 BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm14111-201ENSMUST00000119851 999 ntBASIC9.67□□□□□ -0.86
Cdx2P43241 Gm6881-201ENSMUST00000121811 833 ntBASIC9.67□□□□□ -0.86
Cdx2P43241 Cyp2j15-ps-201ENSMUST00000122267 686 ntBASIC9.67□□□□□ -0.86
Cdx2P43241 Gm22481-201ENSMUST00000122562 192 ntBASIC9.67□□□□□ -0.86
Cdx2P43241 Gm8817-201ENSMUST00000126769 693 ntTSL 2 BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm11770-201ENSMUST00000135048 548 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Elof1-201ENSMUST00000013966 888 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm13660-201ENSMUST00000142828 722 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 1700057H15Rik-202ENSMUST00000143859 704 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm13201-201ENSMUST00000144031 600 ntTSL 3 BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC9.67□□□□□ -0.86
Cdx2P43241 Rspo4os-201ENSMUST00000152229 1281 ntTSL 5 BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm16350-201ENSMUST00000162958 446 ntTSL 2 BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm6970-201ENSMUST00000169692 666 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
Cdx2P43241 Ccdc190-202ENSMUST00000175731 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Mrgpra3-201ENSMUST00000176369 1295 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm9866-201ENSMUST00000177636 486 ntTSL 5 BASIC9.67□□□□□ -0.86
Cdx2P43241 Ppp1r2-ps1-201ENSMUST00000178232 621 ntBASIC9.67□□□□□ -0.86
Cdx2P43241 Gm21818-201ENSMUST00000178828 513 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
Cdx2P43241 Ppp1r2-ps6-201ENSMUST00000179333 621 ntBASIC9.67□□□□□ -0.86
Cdx2P43241 Rwdd2a-203ENSMUST00000185566 1054 ntAPPRIS P1 TSL 2 BASIC9.67□□□□□ -0.86
Cdx2P43241 CT025579.2-201ENSMUST00000225280 816 ntBASIC9.67□□□□□ -0.86
Cdx2P43241 Rpl6-201ENSMUST00000031617 1270 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Apoc3-201ENSMUST00000034586 526 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Olfr649-201ENSMUST00000060440 939 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
Cdx2P43241 Gm5507-201ENSMUST00000091897 1008 ntBASIC9.67□□□□□ -0.86
Cdx2P43241 Gm8055-201ENSMUST00000099956 1008 ntBASIC9.67□□□□□ -0.86
Cdx2P43241 Zcchc4-201ENSMUST00000031077 5743 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Micalcl-202ENSMUST00000051308 2399 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Ern2-201ENSMUST00000033153 2914 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx2P43241 Myo1c-203ENSMUST00000102505 4652 ntAPPRIS ALT1 TSL 5 BASIC9.67□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 176.1 ms