Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Phf21a-205ENSMUST00000111291 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Zfp418-201ENSMUST00000051435 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Pcdha6-201ENSMUST00000193389 4653 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Rnf216-209ENSMUST00000200607 3704 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC11.86□□□□□ -0.51
Traf1P39428 1700095J12Rik-201ENSMUST00000124620 737 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 C030013C21Rik-201ENSMUST00000133400 795 ntTSL 3 BASIC11.86□□□□□ -0.51
Traf1P39428 Gm3687-201ENSMUST00000161710 460 ntBASIC11.86□□□□□ -0.51
Traf1P39428 Erg-208ENSMUST00000176345 1222 ntTSL 5 BASIC11.86□□□□□ -0.51
Traf1P39428 Gm25591-201ENSMUST00000177317 94 ntBASIC11.86□□□□□ -0.51
Traf1P39428 Gm26725-201ENSMUST00000180652 1113 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Gm8756-201ENSMUST00000183250 929 ntBASIC11.86□□□□□ -0.51
Traf1P39428 Mrgprx3-ps-201ENSMUST00000187741 918 ntBASIC11.86□□□□□ -0.51
Traf1P39428 Smim23-201ENSMUST00000020508 620 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Thy1-205ENSMUST00000215156 460 ntTSL 5 BASIC11.86□□□□□ -0.51
Traf1P39428 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Traf1P39428 AC187103.3-201ENSMUST00000225725 646 ntBASIC11.86□□□□□ -0.51
Traf1P39428 Tprg-201ENSMUST00000056087 1084 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Vwa3b-205ENSMUST00000162449 1360 ntAPPRIS P5 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 4933422A05Rik-201ENSMUST00000213706 1356 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Tie1-203ENSMUST00000184261 4234 ntTSL 2 BASIC11.86□□□□□ -0.51
Traf1P39428 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Zfp386-201ENSMUST00000073551 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Foxr1-201ENSMUST00000098837 1968 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 H2-Ob-201ENSMUST00000095342 2671 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Ppef2-202ENSMUST00000201130 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Lrsam1-201ENSMUST00000028132 3981 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Mcm3ap-201ENSMUST00000170795 6427 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Srcap-201ENSMUST00000066582 4545 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 P3h1-202ENSMUST00000081606 2820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Traf1P39428 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Gm15631-201ENSMUST00000142962 2436 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Slc16a7-202ENSMUST00000105257 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Fam161a-201ENSMUST00000058269 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Ucp1-201ENSMUST00000034146 1636 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 C230021G24Rik-201ENSMUST00000181196 3679 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Dnmt1-202ENSMUST00000177754 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Trim36-202ENSMUST00000167364 4543 ntTSL 5 BASIC11.85□□□□□ -0.51
Traf1P39428 Gbp3-201ENSMUST00000029935 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Gm16702-201ENSMUST00000181180 2384 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 AC115746.1-201ENSMUST00000228949 3617 ntBASIC11.85□□□□□ -0.51
Traf1P39428 1700019J19Rik-205ENSMUST00000216531 2813 ntTSL 5 BASIC11.85□□□□□ -0.51
Traf1P39428 Traip-201ENSMUST00000049348 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Zfp943-201ENSMUST00000055349 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Nudcd1-201ENSMUST00000038719 2600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 H2-M10.3-201ENSMUST00000073546 1593 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Itpa-201ENSMUST00000103193 1390 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Adgrl3-204ENSMUST00000117407 5705 ntTSL 5 BASIC11.85□□□□□ -0.51
Traf1P39428 Focad-202ENSMUST00000107147 1177 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Gm12435-201ENSMUST00000118949 1016 ntBASIC11.85□□□□□ -0.51
Traf1P39428 Gm9513-201ENSMUST00000165591 306 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Rergl-201ENSMUST00000170650 958 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Omt2b-203ENSMUST00000187667 727 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 1700030N03Rik-206ENSMUST00000191405 651 ntTSL 3 BASIC11.85□□□□□ -0.51
Traf1P39428 Gm37016-201ENSMUST00000195507 660 ntTSL 5 BASIC11.85□□□□□ -0.51
Traf1P39428 Gm42511-201ENSMUST00000196160 234 ntBASIC11.85□□□□□ -0.51
Traf1P39428 Gm19605-205ENSMUST00000221712 677 ntTSL 3 BASIC11.85□□□□□ -0.51
Traf1P39428 Gm5148-202ENSMUST00000099128 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Capn3-206ENSMUST00000110721 2898 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Orc4-201ENSMUST00000028098 4066 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Gm31763-202ENSMUST00000218205 1724 ntBASIC11.85□□□□□ -0.51
Traf1P39428 Gpm6b-208ENSMUST00000112233 2949 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Traf1P39428 Slc1a2-204ENSMUST00000111213 2093 ntTSL 5 BASIC11.85□□□□□ -0.51
Traf1P39428 Pigq-218ENSMUST00000208043 2987 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
Traf1P39428 Gm15599-201ENSMUST00000122283 1345 ntBASIC11.85□□□□□ -0.51
Traf1P39428 Spata17-201ENSMUST00000027908 1303 ntAPPRIS P3 TSL 2 BASIC11.85□□□□□ -0.51
Traf1P39428 Pklr-201ENSMUST00000047111 2787 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Gm13920-201ENSMUST00000146134 1663 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Bicd1-203ENSMUST00000111513 4049 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Ap1m2-202ENSMUST00000115433 2586 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Fga-202ENSMUST00000166581 2587 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Traf1P39428 Arhgap6-204ENSMUST00000112129 2487 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Prdm16-205ENSMUST00000105637 8595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Prdm16-201ENSMUST00000030902 8598 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Pgbd5-206ENSMUST00000172566 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Ldb3-205ENSMUST00000090040 4981 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Gm36211-201ENSMUST00000198171 1497 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 2310065F04Rik-201ENSMUST00000125538 2724 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Smarca2-201ENSMUST00000025862 5921 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Traf1P39428 Frmpd3-203ENSMUST00000208130 7314 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Traf1P39428 Gm364-201ENSMUST00000114725 2156 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Traf1P39428 Specc1-208ENSMUST00000201624 2518 ntTSL 5 BASIC11.84□□□□□ -0.51
Traf1P39428 Loxhd1-202ENSMUST00000096547 6595 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Olfr30-202ENSMUST00000215691 2404 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Traf1P39428 Smad2-201ENSMUST00000025453 2410 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Tmem30c-203ENSMUST00000120112 3478 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Gm23132-201ENSMUST00000104254 132 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Ppih-205ENSMUST00000106321 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Gm3404-201ENSMUST00000110596 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Gm8864-201ENSMUST00000118653 1010 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Gm12733-201ENSMUST00000119871 767 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Gm12035-201ENSMUST00000121890 623 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Gm23999-201ENSMUST00000158057 104 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Gm5766-202ENSMUST00000161633 799 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Pkib-204ENSMUST00000175852 731 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms