Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Smc1aQ9CU62 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Smc1aQ9CU62 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Smc1aQ9CU62 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Smc1aQ9CU62 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC21.88■■□□□ 1.09
Smc1aQ9CU62 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Smc1aQ9CU62 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Smc1aQ9CU62 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.87■■□□□ 1.09
Smc1aQ9CU62 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Smc1aQ9CU62 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Smc1aQ9CU62 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Gm43017-201ENSMUST00000198296 752 ntBASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Smc1aQ9CU62 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Smc1aQ9CU62 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Smc1aQ9CU62 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Smc1aQ9CU62 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Smc1aQ9CU62 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
Smc1aQ9CU62 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Smc1aQ9CU62 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Smc1aQ9CU62 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Smc1aQ9CU62 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
Smc1aQ9CU62 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Smc1aQ9CU62 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Smc1aQ9CU62 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.81■■□□□ 1.08
Smc1aQ9CU62 Gm8493-201ENSMUST00000196881 489 ntBASIC21.81■■□□□ 1.08
Smc1aQ9CU62 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Smc1aQ9CU62 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.81■■□□□ 1.08
Smc1aQ9CU62 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Smc1aQ9CU62 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
Smc1aQ9CU62 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Smc1aQ9CU62 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 1066.4 ms