Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Clp1Q99LI9 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Clp1Q99LI9 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
Clp1Q99LI9 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Clp1Q99LI9 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Clp1Q99LI9 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Clp1Q99LI9 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Clp1Q99LI9 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Clp1Q99LI9 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clp1Q99LI9 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clp1Q99LI9 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clp1Q99LI9 Gm12527-201ENSMUST00000117967 564 ntBASIC20.98■□□□□ 0.95
Clp1Q99LI9 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clp1Q99LI9 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.98■□□□□ 0.95
Clp1Q99LI9 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clp1Q99LI9 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clp1Q99LI9 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.98■□□□□ 0.95
Clp1Q99LI9 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Gm7290-201ENSMUST00000104990 617 ntBASIC20.97■□□□□ 0.95
Clp1Q99LI9 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Gm13148-201ENSMUST00000118892 745 ntBASIC20.97■□□□□ 0.95
Clp1Q99LI9 Gm12918-201ENSMUST00000120234 636 ntBASIC20.97■□□□□ 0.95
Clp1Q99LI9 Gm15710-201ENSMUST00000121821 636 ntBASIC20.97■□□□□ 0.95
Clp1Q99LI9 Gm5075-201ENSMUST00000196916 622 ntBASIC20.97■□□□□ 0.95
Clp1Q99LI9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.97■□□□□ 0.95
Clp1Q99LI9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.97■□□□□ 0.95
Clp1Q99LI9 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clp1Q99LI9 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clp1Q99LI9 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Clp1Q99LI9 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.96■□□□□ 0.95
Clp1Q99LI9 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
Clp1Q99LI9 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Clp1Q99LI9 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.96■□□□□ 0.95
Clp1Q99LI9 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.96■□□□□ 0.95
Clp1Q99LI9 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Clp1Q99LI9 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.95■□□□□ 0.94
Clp1Q99LI9 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
Clp1Q99LI9 Gm22240-201ENSMUST00000175225 82 ntBASIC20.95■□□□□ 0.94
Clp1Q99LI9 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
Clp1Q99LI9 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.95■□□□□ 0.94
Clp1Q99LI9 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clp1Q99LI9 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Clp1Q99LI9 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clp1Q99LI9 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.94■□□□□ 0.94
Clp1Q99LI9 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Clp1Q99LI9 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clp1Q99LI9 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Clp1Q99LI9 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Clp1Q99LI9 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Clp1Q99LI9 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Clp1Q99LI9 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Clp1Q99LI9 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Clp1Q99LI9 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clp1Q99LI9 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clp1Q99LI9 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
Clp1Q99LI9 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.92■□□□□ 0.94
Clp1Q99LI9 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clp1Q99LI9 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clp1Q99LI9 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Clp1Q99LI9 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Clp1Q99LI9 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Clp1Q99LI9 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.91■□□□□ 0.94
Clp1Q99LI9 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Clp1Q99LI9 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Clp1Q99LI9 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Clp1Q99LI9 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Clp1Q99LI9 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Clp1Q99LI9 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clp1Q99LI9 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clp1Q99LI9 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Clp1Q99LI9 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clp1Q99LI9 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.9■□□□□ 0.94
Clp1Q99LI9 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.9■□□□□ 0.94
Clp1Q99LI9 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Clp1Q99LI9 Gm8520-201ENSMUST00000186517 868 ntBASIC20.9■□□□□ 0.94
Clp1Q99LI9 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clp1Q99LI9 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clp1Q99LI9 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.9■□□□□ 0.94
Clp1Q99LI9 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Clp1Q99LI9 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Clp1Q99LI9 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.89■□□□□ 0.94
Clp1Q99LI9 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Clp1Q99LI9 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Clp1Q99LI9 Gm6365-201ENSMUST00000054711 744 ntBASIC20.89■□□□□ 0.93
Clp1Q99LI9 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Clp1Q99LI9 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Clp1Q99LI9 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Clp1Q99LI9 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Clp1Q99LI9 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Clp1Q99LI9 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Clp1Q99LI9 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Clp1Q99LI9 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clp1Q99LI9 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms