Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Usp40Q8BWR4 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Usp40Q8BWR4 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC27.33■■□□□ 1.97
Usp40Q8BWR4 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Usp40Q8BWR4 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Usp40Q8BWR4 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
Usp40Q8BWR4 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.96
Usp40Q8BWR4 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Usp40Q8BWR4 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
Usp40Q8BWR4 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
Usp40Q8BWR4 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
Usp40Q8BWR4 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Usp40Q8BWR4 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC27.31■■□□□ 1.96
Usp40Q8BWR4 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC27.31■■□□□ 1.96
Usp40Q8BWR4 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Usp40Q8BWR4 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Usp40Q8BWR4 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC27.31■■□□□ 1.96
Usp40Q8BWR4 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Usp40Q8BWR4 Snhg20-203ENSMUST00000182811 2153 ntBASIC27.31■■□□□ 1.96
Usp40Q8BWR4 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Usp40Q8BWR4 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC27.3■■□□□ 1.96
Usp40Q8BWR4 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC27.3■■□□□ 1.96
Usp40Q8BWR4 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC27.3■■□□□ 1.96
Usp40Q8BWR4 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Gm37035-201ENSMUST00000194809 2148 ntBASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Usp40Q8BWR4 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC27.28■■□□□ 1.96
Usp40Q8BWR4 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC27.28■■□□□ 1.96
Usp40Q8BWR4 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
Usp40Q8BWR4 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Usp40Q8BWR4 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC27.28■■□□□ 1.96
Usp40Q8BWR4 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
Usp40Q8BWR4 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
Usp40Q8BWR4 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
Usp40Q8BWR4 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC27.26■■□□□ 1.96
Usp40Q8BWR4 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Usp40Q8BWR4 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC27.26■■□□□ 1.95
Usp40Q8BWR4 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Usp40Q8BWR4 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Gm13042-201ENSMUST00000119244 1955 ntBASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp40Q8BWR4 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Usp40Q8BWR4 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp40Q8BWR4 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp40Q8BWR4 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp40Q8BWR4 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp40Q8BWR4 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp40Q8BWR4 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
Usp40Q8BWR4 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp40Q8BWR4 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp40Q8BWR4 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
Usp40Q8BWR4 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC27.22■■□□□ 1.95
Usp40Q8BWR4 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Usp40Q8BWR4 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Usp40Q8BWR4 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC27.22■■□□□ 1.95
Usp40Q8BWR4 Gm42911-201ENSMUST00000199360 1630 ntBASIC27.22■■□□□ 1.95
Usp40Q8BWR4 Cdkn3-203ENSMUST00000227149 1952 ntBASIC27.21■■□□□ 1.95
Usp40Q8BWR4 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Usp40Q8BWR4 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.95
Usp40Q8BWR4 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
Usp40Q8BWR4 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.95
Usp40Q8BWR4 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
Usp40Q8BWR4 CT030146.1-201ENSMUST00000220919 217 ntBASIC27.2■■□□□ 1.94
Usp40Q8BWR4 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Usp40Q8BWR4 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Usp40Q8BWR4 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.94
Usp40Q8BWR4 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC27.19■■□□□ 1.94
Usp40Q8BWR4 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Usp40Q8BWR4 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Usp40Q8BWR4 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Usp40Q8BWR4 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC27.18■■□□□ 1.94
Usp40Q8BWR4 Ap3s1-204ENSMUST00000225520 957 ntBASIC27.18■■□□□ 1.94
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms