Protein–RNA interactions for Protein: Q80W14

Prpf40b, Pre-mRNA-processing factor 40 homolog B, mousemouse

Predictions only

Length 870 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40bQ80W14 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Notumos-201ENSMUST00000151998 2659 ntBASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Nespas-201ENSMUST00000143738 1083 ntBASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40bQ80W14 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40bQ80W14 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40bQ80W14 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40bQ80W14 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40bQ80W14 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40bQ80W14 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC22.71■■□□□ 1.23
Prpf40bQ80W14 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC22.71■■□□□ 1.23
Prpf40bQ80W14 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC22.71■■□□□ 1.23
Prpf40bQ80W14 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40bQ80W14 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40bQ80W14 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
Prpf40bQ80W14 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
Prpf40bQ80W14 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Prpf40bQ80W14 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
Prpf40bQ80W14 AC165080.2-201ENSMUST00000217491 1530 ntBASIC22.7■■□□□ 1.22
Prpf40bQ80W14 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Prpf40bQ80W14 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Prpf40bQ80W14 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Prpf40bQ80W14 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Prpf40bQ80W14 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
Prpf40bQ80W14 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
Prpf40bQ80W14 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Prpf40bQ80W14 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Prpf40bQ80W14 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Prpf40bQ80W14 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Prpf40bQ80W14 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC22.69■■□□□ 1.22
Prpf40bQ80W14 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC22.69■■□□□ 1.22
Prpf40bQ80W14 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC22.69■■□□□ 1.22
Prpf40bQ80W14 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC22.68■■□□□ 1.22
Prpf40bQ80W14 Snhg20-203ENSMUST00000182811 2153 ntBASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40bQ80W14 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
Prpf40bQ80W14 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC22.66■■□□□ 1.22
Prpf40bQ80W14 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC22.66■■□□□ 1.22
Prpf40bQ80W14 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Prpf40bQ80W14 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40bQ80W14 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40bQ80W14 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40bQ80W14 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Prpf40bQ80W14 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40bQ80W14 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Prpf40bQ80W14 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40bQ80W14 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
Prpf40bQ80W14 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40bQ80W14 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Prpf40bQ80W14 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC22.64■■□□□ 1.22
Prpf40bQ80W14 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC22.64■■□□□ 1.22
Prpf40bQ80W14 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Prpf40bQ80W14 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Prpf40bQ80W14 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
Prpf40bQ80W14 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
Prpf40bQ80W14 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms