Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Trim56Q80VI1 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trim56Q80VI1 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
Trim56Q80VI1 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trim56Q80VI1 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trim56Q80VI1 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC23.41■■□□□ 1.34
Trim56Q80VI1 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
Trim56Q80VI1 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Trim56Q80VI1 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Trim56Q80VI1 Gm40848-201ENSMUST00000221998 324 ntBASIC23.41■■□□□ 1.34
Trim56Q80VI1 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Trim56Q80VI1 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
Trim56Q80VI1 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Trim56Q80VI1 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Trim56Q80VI1 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trim56Q80VI1 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
Trim56Q80VI1 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trim56Q80VI1 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC23.4■■□□□ 1.34
Trim56Q80VI1 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Trim56Q80VI1 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
Trim56Q80VI1 Gm26833-201ENSMUST00000180899 440 ntBASIC23.4■■□□□ 1.34
Trim56Q80VI1 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
Trim56Q80VI1 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trim56Q80VI1 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Trim56Q80VI1 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC23.39■■□□□ 1.33
Trim56Q80VI1 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
Trim56Q80VI1 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Trim56Q80VI1 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC23.39■■□□□ 1.33
Trim56Q80VI1 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Trim56Q80VI1 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Trim56Q80VI1 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Trim56Q80VI1 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Trim56Q80VI1 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
Trim56Q80VI1 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Cdc34b-202ENSMUST00000188741 1252 ntBASIC23.38■■□□□ 1.33
Trim56Q80VI1 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim56Q80VI1 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC23.37■■□□□ 1.33
Trim56Q80VI1 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trim56Q80VI1 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trim56Q80VI1 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Trim56Q80VI1 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC23.36■■□□□ 1.33
Trim56Q80VI1 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trim56Q80VI1 Gm6802-201ENSMUST00000167843 1983 ntBASIC23.36■■□□□ 1.33
Trim56Q80VI1 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC23.36■■□□□ 1.33
Trim56Q80VI1 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trim56Q80VI1 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim56Q80VI1 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
Trim56Q80VI1 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim56Q80VI1 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim56Q80VI1 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC23.35■■□□□ 1.33
Trim56Q80VI1 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
Trim56Q80VI1 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Trim56Q80VI1 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Trim56Q80VI1 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Trim56Q80VI1 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
Trim56Q80VI1 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Trim56Q80VI1 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Trim56Q80VI1 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trim56Q80VI1 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trim56Q80VI1 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Trim56Q80VI1 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trim56Q80VI1 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Trim56Q80VI1 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
Trim56Q80VI1 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Trim56Q80VI1 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim56Q80VI1 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim56Q80VI1 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Trim56Q80VI1 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Trim56Q80VI1 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim56Q80VI1 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Trim56Q80VI1 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim56Q80VI1 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim56Q80VI1 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms