Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Upf3aQ3ULJ3 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3aQ3ULJ3 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3aQ3ULJ3 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.86■□□□□ 0.93
Upf3aQ3ULJ3 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.86■□□□□ 0.93
Upf3aQ3ULJ3 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3aQ3ULJ3 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3aQ3ULJ3 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3aQ3ULJ3 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3aQ3ULJ3 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Upf3aQ3ULJ3 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Upf3aQ3ULJ3 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Upf3aQ3ULJ3 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Upf3aQ3ULJ3 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Upf3aQ3ULJ3 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3aQ3ULJ3 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3aQ3ULJ3 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3aQ3ULJ3 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3aQ3ULJ3 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3aQ3ULJ3 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.84■□□□□ 0.93
Upf3aQ3ULJ3 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3aQ3ULJ3 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3aQ3ULJ3 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3aQ3ULJ3 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3aQ3ULJ3 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.84■□□□□ 0.93
Upf3aQ3ULJ3 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.83■□□□□ 0.93
Upf3aQ3ULJ3 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf3aQ3ULJ3 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf3aQ3ULJ3 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Upf3aQ3ULJ3 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Upf3aQ3ULJ3 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
Upf3aQ3ULJ3 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Upf3aQ3ULJ3 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Upf3aQ3ULJ3 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Upf3aQ3ULJ3 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
Upf3aQ3ULJ3 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.8■□□□□ 0.92
Upf3aQ3ULJ3 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Upf3aQ3ULJ3 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Upf3aQ3ULJ3 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Upf3aQ3ULJ3 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Upf3aQ3ULJ3 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3aQ3ULJ3 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3aQ3ULJ3 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Upf3aQ3ULJ3 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3aQ3ULJ3 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3aQ3ULJ3 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3aQ3ULJ3 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.78■□□□□ 0.92
Upf3aQ3ULJ3 Gm13146-201ENSMUST00000118508 780 ntBASIC20.78■□□□□ 0.92
Upf3aQ3ULJ3 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Upf3aQ3ULJ3 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.78■□□□□ 0.92
Upf3aQ3ULJ3 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Upf3aQ3ULJ3 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Upf3aQ3ULJ3 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms