Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Mir6236-201ENSMUST00000184437 123 ntBASIC23.23■■□□□ 1.31
Limch1Q3UH68 Gm43137-201ENSMUST00000198052 594 ntBASIC23.23■■□□□ 1.31
Limch1Q3UH68 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Limch1Q3UH68 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Limch1Q3UH68 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Limch1Q3UH68 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Limch1Q3UH68 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Limch1Q3UH68 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC23.22■■□□□ 1.31
Limch1Q3UH68 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Limch1Q3UH68 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC23.22■■□□□ 1.31
Limch1Q3UH68 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
Limch1Q3UH68 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Limch1Q3UH68 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Limch1Q3UH68 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Limch1Q3UH68 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Limch1Q3UH68 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Limch1Q3UH68 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Limch1Q3UH68 Gm43909-201ENSMUST00000203443 1876 ntBASIC23.22■■□□□ 1.31
Limch1Q3UH68 Krt8-ps-201ENSMUST00000208495 945 ntBASIC23.21■■□□□ 1.31
Limch1Q3UH68 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Limch1Q3UH68 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Limch1Q3UH68 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Limch1Q3UH68 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Limch1Q3UH68 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Limch1Q3UH68 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Limch1Q3UH68 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Limch1Q3UH68 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Limch1Q3UH68 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Limch1Q3UH68 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
Limch1Q3UH68 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Limch1Q3UH68 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Limch1Q3UH68 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Limch1Q3UH68 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Limch1Q3UH68 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Limch1Q3UH68 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
Limch1Q3UH68 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC23.19■■□□□ 1.3
Limch1Q3UH68 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC23.19■■□□□ 1.3
Limch1Q3UH68 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Limch1Q3UH68 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Limch1Q3UH68 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Limch1Q3UH68 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Limch1Q3UH68 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
Limch1Q3UH68 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
Limch1Q3UH68 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Limch1Q3UH68 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
Limch1Q3UH68 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Mir7075-201ENSMUST00000184187 82 ntBASIC23.17■■□□□ 1.3
Limch1Q3UH68 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Limch1Q3UH68 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Limch1Q3UH68 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Limch1Q3UH68 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
Limch1Q3UH68 Gm5297-201ENSMUST00000198555 1171 ntBASIC23.16■■□□□ 1.3
Limch1Q3UH68 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Limch1Q3UH68 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC23.16■■□□□ 1.3
Limch1Q3UH68 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Limch1Q3UH68 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Limch1Q3UH68 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Limch1Q3UH68 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
Limch1Q3UH68 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC23.15■■□□□ 1.3
Limch1Q3UH68 Gm21168-201ENSMUST00000199646 1096 ntBASIC23.15■■□□□ 1.3
Limch1Q3UH68 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Limch1Q3UH68 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Limch1Q3UH68 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Limch1Q3UH68 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Limch1Q3UH68 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Limch1Q3UH68 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Limch1Q3UH68 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Limch1Q3UH68 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Limch1Q3UH68 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC23.13■■□□□ 1.29
Limch1Q3UH68 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Limch1Q3UH68 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Limch1Q3UH68 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
Limch1Q3UH68 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Limch1Q3UH68 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms