Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC17.9■□□□□ 0.46
Cdh11P55288 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdh11P55288 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdh11P55288 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdh11P55288 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdh11P55288 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdh11P55288 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdh11P55288 Gm12922-201ENSMUST00000120626 809 ntBASIC17.89■□□□□ 0.45
Cdh11P55288 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
Cdh11P55288 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.89■□□□□ 0.45
Cdh11P55288 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Cdh11P55288 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.89■□□□□ 0.45
Cdh11P55288 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdh11P55288 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdh11P55288 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdh11P55288 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.89■□□□□ 0.45
Cdh11P55288 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.89■□□□□ 0.45
Cdh11P55288 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC17.88■□□□□ 0.45
Cdh11P55288 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdh11P55288 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdh11P55288 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdh11P55288 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cdh11P55288 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdh11P55288 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdh11P55288 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdh11P55288 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdh11P55288 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cdh11P55288 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdh11P55288 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdh11P55288 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdh11P55288 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC17.87■□□□□ 0.45
Cdh11P55288 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdh11P55288 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.87■□□□□ 0.45
Cdh11P55288 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdh11P55288 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Cdh11P55288 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdh11P55288 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdh11P55288 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdh11P55288 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdh11P55288 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Cdh11P55288 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Cdh11P55288 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.86■□□□□ 0.45
Cdh11P55288 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC17.86■□□□□ 0.45
Cdh11P55288 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC17.86■□□□□ 0.45
Cdh11P55288 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC17.86■□□□□ 0.45
Cdh11P55288 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC17.86■□□□□ 0.45
Cdh11P55288 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdh11P55288 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdh11P55288 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cdh11P55288 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Cdh11P55288 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC17.85■□□□□ 0.45
Cdh11P55288 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdh11P55288 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC17.85■□□□□ 0.45
Cdh11P55288 AC140930.3-201ENSMUST00000222935 274 ntBASIC17.85■□□□□ 0.45
Cdh11P55288 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdh11P55288 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdh11P55288 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdh11P55288 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.84■□□□□ 0.45
Cdh11P55288 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cdh11P55288 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdh11P55288 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdh11P55288 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
Cdh11P55288 Gm21956-201ENSMUST00000179946 522 ntBASIC17.84■□□□□ 0.45
Cdh11P55288 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Cdh11P55288 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.84■□□□□ 0.45
Cdh11P55288 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdh11P55288 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cdh11P55288 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdh11P55288 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdh11P55288 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdh11P55288 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC17.83■□□□□ 0.44
Cdh11P55288 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdh11P55288 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdh11P55288 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdh11P55288 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Cdh11P55288 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdh11P55288 Gm5112-201ENSMUST00000204407 2368 ntBASIC17.83■□□□□ 0.44
Cdh11P55288 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.83■□□□□ 0.44
Cdh11P55288 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdh11P55288 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdh11P55288 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdh11P55288 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
Cdh11P55288 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.82■□□□□ 0.44
Cdh11P55288 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.82■□□□□ 0.44
Cdh11P55288 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdh11P55288 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Cdh11P55288 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdh11P55288 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdh11P55288 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdh11P55288 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdh11P55288 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms