Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha4O88689 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha4O88689 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha4O88689 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha4O88689 AC165080.2-201ENSMUST00000217491 1530 ntBASIC22.12■■□□□ 1.13
Pcdha4O88689 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC22.12■■□□□ 1.13
Pcdha4O88689 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
Pcdha4O88689 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha4O88689 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
Pcdha4O88689 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha4O88689 Serp2-204ENSMUST00000228055 705 ntBASIC22.12■■□□□ 1.13
Pcdha4O88689 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha4O88689 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC22.12■■□□□ 1.13
Pcdha4O88689 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha4O88689 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha4O88689 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha4O88689 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha4O88689 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
Pcdha4O88689 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha4O88689 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha4O88689 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
Pcdha4O88689 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha4O88689 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
Pcdha4O88689 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha4O88689 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha4O88689 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha4O88689 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha4O88689 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha4O88689 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC22.1■■□□□ 1.13
Pcdha4O88689 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha4O88689 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC22.1■■□□□ 1.13
Pcdha4O88689 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha4O88689 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha4O88689 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha4O88689 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha4O88689 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Pcdha4O88689 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Pcdha4O88689 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC22.09■■□□□ 1.13
Pcdha4O88689 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Pcdha4O88689 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Pcdha4O88689 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC22.09■■□□□ 1.13
Pcdha4O88689 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Pcdha4O88689 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdha4O88689 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdha4O88689 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdha4O88689 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdha4O88689 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC22.08■■□□□ 1.13
Pcdha4O88689 Gm2011-201ENSMUST00000203124 1263 ntBASIC22.08■■□□□ 1.13
Pcdha4O88689 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdha4O88689 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Pcdha4O88689 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Pcdha4O88689 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdha4O88689 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
Pcdha4O88689 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Pcdha4O88689 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
Pcdha4O88689 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Pcdha4O88689 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Pcdha4O88689 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC22.07■■□□□ 1.12
Pcdha4O88689 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdha4O88689 Gm15039-201ENSMUST00000118914 875 ntBASIC22.07■■□□□ 1.12
Pcdha4O88689 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC22.07■■□□□ 1.12
Pcdha4O88689 Gm26833-201ENSMUST00000180899 440 ntBASIC22.07■■□□□ 1.12
Pcdha4O88689 Gm21168-201ENSMUST00000199646 1096 ntBASIC22.07■■□□□ 1.12
Pcdha4O88689 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdha4O88689 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
Pcdha4O88689 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
Pcdha4O88689 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Pcdha4O88689 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
Pcdha4O88689 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha4O88689 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC22.05■■□□□ 1.12
Pcdha4O88689 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdha4O88689 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
Pcdha4O88689 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdha4O88689 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdha4O88689 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
Pcdha4O88689 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdha4O88689 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdha4O88689 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC22.05■■□□□ 1.12
Pcdha4O88689 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdha4O88689 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha4O88689 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha4O88689 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha4O88689 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha4O88689 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha4O88689 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha4O88689 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Pcdha4O88689 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha4O88689 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC22.03■■□□□ 1.12
Pcdha4O88689 Gm6802-201ENSMUST00000167843 1983 ntBASIC22.03■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms