Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.35■□□□□ 0.85
Sdc4O35988 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sdc4O35988 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sdc4O35988 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sdc4O35988 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sdc4O35988 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Sdc4O35988 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.34■□□□□ 0.85
Sdc4O35988 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.34■□□□□ 0.85
Sdc4O35988 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.34■□□□□ 0.85
Sdc4O35988 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.34■□□□□ 0.85
Sdc4O35988 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.34■□□□□ 0.85
Sdc4O35988 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sdc4O35988 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Sdc4O35988 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sdc4O35988 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Sdc4O35988 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Sdc4O35988 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Sdc4O35988 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.32■□□□□ 0.84
Sdc4O35988 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.32■□□□□ 0.84
Sdc4O35988 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
Sdc4O35988 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Sdc4O35988 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Sdc4O35988 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Sdc4O35988 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sdc4O35988 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.32■□□□□ 0.84
Sdc4O35988 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Sdc4O35988 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sdc4O35988 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sdc4O35988 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sdc4O35988 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.31■□□□□ 0.84
Sdc4O35988 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
Sdc4O35988 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sdc4O35988 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Sdc4O35988 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sdc4O35988 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sdc4O35988 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Sdc4O35988 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.31■□□□□ 0.84
Sdc4O35988 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Sdc4O35988 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Sdc4O35988 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdc4O35988 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Sdc4O35988 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdc4O35988 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdc4O35988 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdc4O35988 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.29■□□□□ 0.84
Sdc4O35988 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20.29■□□□□ 0.84
Sdc4O35988 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.29■□□□□ 0.84
Sdc4O35988 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.29■□□□□ 0.84
Sdc4O35988 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Sdc4O35988 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Sdc4O35988 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Sdc4O35988 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Sdc4O35988 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Sdc4O35988 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdc4O35988 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Sdc4O35988 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdc4O35988 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdc4O35988 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Sdc4O35988 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdc4O35988 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
Sdc4O35988 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Sdc4O35988 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.28■□□□□ 0.84
Sdc4O35988 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdc4O35988 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdc4O35988 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sdc4O35988 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Sdc4O35988 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sdc4O35988 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sdc4O35988 Gm42642-201ENSMUST00000200683 355 ntBASIC20.27■□□□□ 0.84
Sdc4O35988 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sdc4O35988 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sdc4O35988 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sdc4O35988 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Sdc4O35988 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdc4O35988 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.26■□□□□ 0.83
Sdc4O35988 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdc4O35988 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdc4O35988 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms