Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Nr1i3O35627 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.25■□□□□ 0.99
Nr1i3O35627 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nr1i3O35627 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nr1i3O35627 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nr1i3O35627 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC21.24■□□□□ 0.99
Nr1i3O35627 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nr1i3O35627 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
Nr1i3O35627 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nr1i3O35627 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1i3O35627 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1i3O35627 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.23■□□□□ 0.99
Nr1i3O35627 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.23■□□□□ 0.99
Nr1i3O35627 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1i3O35627 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1i3O35627 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Nr1i3O35627 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1i3O35627 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
Nr1i3O35627 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Nr1i3O35627 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1i3O35627 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.22■□□□□ 0.99
Nr1i3O35627 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Nr1i3O35627 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1i3O35627 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1i3O35627 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Nr1i3O35627 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.22■□□□□ 0.99
Nr1i3O35627 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Nr1i3O35627 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.21■□□□□ 0.99
Nr1i3O35627 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Nr1i3O35627 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.21■□□□□ 0.99
Nr1i3O35627 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Iqck-206ENSMUST00000208658 2891 ntBASIC21.21■□□□□ 0.99
Nr1i3O35627 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.21■□□□□ 0.99
Nr1i3O35627 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1i3O35627 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.21■□□□□ 0.99
Nr1i3O35627 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.2■□□□□ 0.98
Nr1i3O35627 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1i3O35627 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1i3O35627 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1i3O35627 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1i3O35627 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.2■□□□□ 0.98
Nr1i3O35627 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Nr1i3O35627 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1i3O35627 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1i3O35627 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Nr1i3O35627 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.19■□□□□ 0.98
Nr1i3O35627 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.19■□□□□ 0.98
Nr1i3O35627 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1i3O35627 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1i3O35627 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
Nr1i3O35627 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1i3O35627 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1i3O35627 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1i3O35627 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1i3O35627 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1i3O35627 AA386476-201ENSMUST00000098781 1665 ntBASIC21.18■□□□□ 0.98
Nr1i3O35627 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Nr1i3O35627 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1i3O35627 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1i3O35627 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Nr1i3O35627 Gm45102-201ENSMUST00000207427 857 ntBASIC21.17■□□□□ 0.98
Nr1i3O35627 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1i3O35627 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1i3O35627 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1i3O35627 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1i3O35627 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
Nr1i3O35627 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Nr1i3O35627 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1i3O35627 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1i3O35627 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC21.16■□□□□ 0.98
Nr1i3O35627 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1i3O35627 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Nr1i3O35627 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1i3O35627 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1i3O35627 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.16■□□□□ 0.98
Nr1i3O35627 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1i3O35627 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1i3O35627 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1i3O35627 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.15■□□□□ 0.98
Nr1i3O35627 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Nr1i3O35627 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1i3O35627 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1i3O35627 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1i3O35627 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.15■□□□□ 0.98
Nr1i3O35627 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1i3O35627 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1i3O35627 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1i3O35627 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
Nr1i3O35627 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Nr1i3O35627 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nr1i3O35627 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.14■□□□□ 0.97
Nr1i3O35627 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms