Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Mir5122-201ENSMUST00000175004 89 ntBASIC16.33■□□□□ 0.2
Chd6A3KFM7 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC16.33■□□□□ 0.2
Chd6A3KFM7 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd6A3KFM7 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Chd6A3KFM7 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC16.32■□□□□ 0.2
Chd6A3KFM7 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd6A3KFM7 Gm42699-201ENSMUST00000198104 1657 ntBASIC16.32■□□□□ 0.2
Chd6A3KFM7 AC154649.1-201ENSMUST00000227392 384 ntBASIC16.32■□□□□ 0.2
Chd6A3KFM7 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd6A3KFM7 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd6A3KFM7 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd6A3KFM7 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC16.32■□□□□ 0.2
Chd6A3KFM7 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd6A3KFM7 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Chd6A3KFM7 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Gm44771-201ENSMUST00000206975 626 ntBASIC16.31■□□□□ 0.2
Chd6A3KFM7 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Mir1199-201ENSMUST00000117015 119 ntBASIC16.31■□□□□ 0.2
Chd6A3KFM7 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd6A3KFM7 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Chd6A3KFM7 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd6A3KFM7 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Chd6A3KFM7 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Chd6A3KFM7 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd6A3KFM7 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd6A3KFM7 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.3■□□□□ 0.2
Chd6A3KFM7 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.3■□□□□ 0.2
Chd6A3KFM7 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd6A3KFM7 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Chd6A3KFM7 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd6A3KFM7 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd6A3KFM7 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Ank2-226ENSMUST00000189368 339 ntBASIC16.29■□□□□ 0.2
Chd6A3KFM7 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd6A3KFM7 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd6A3KFM7 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Chd6A3KFM7 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd6A3KFM7 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd6A3KFM7 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd6A3KFM7 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd6A3KFM7 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Chd6A3KFM7 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Chd6A3KFM7 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd6A3KFM7 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd6A3KFM7 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Chd6A3KFM7 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd6A3KFM7 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.27■□□□□ 0.2
Chd6A3KFM7 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd6A3KFM7 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd6A3KFM7 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd6A3KFM7 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC16.27■□□□□ 0.2
Chd6A3KFM7 AC115037.1-201ENSMUST00000223391 2173 ntBASIC16.27■□□□□ 0.2
Chd6A3KFM7 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd6A3KFM7 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Chd6A3KFM7 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chd6A3KFM7 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Chd6A3KFM7 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC16.27■□□□□ 0.19
Chd6A3KFM7 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Chd6A3KFM7 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chd6A3KFM7 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd6A3KFM7 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd6A3KFM7 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC16.25■□□□□ 0.19
Chd6A3KFM7 Dio3-201ENSMUST00000097228 1449 ntBASIC16.25■□□□□ 0.19
Chd6A3KFM7 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Chd6A3KFM7 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Chd6A3KFM7 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Chd6A3KFM7 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Chd6A3KFM7 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC16.24■□□□□ 0.19
Chd6A3KFM7 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Chd6A3KFM7 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC16.24■□□□□ 0.19
Chd6A3KFM7 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms