Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Sf3b1-201ENSMUST00000027127 6195 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Tex45-201ENSMUST00000047265 1613 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Kif14-203ENSMUST00000189413 8943 ntAPPRIS P2 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Mgat4a-202ENSMUST00000143636 1802 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Wdfy3-205ENSMUST00000174598 10581 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm5182-201ENSMUST00000217708 6092 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Fam110c-201ENSMUST00000041133 3088 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 4930451G09Rik-201ENSMUST00000090457 2206 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Ldlr-202ENSMUST00000213114 4318 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm10652-201ENSMUST00000199790 2622 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Hdac7-206ENSMUST00000119670 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Olfr1221-202ENSMUST00000143255 2800 ntAPPRIS P1 TSL 3 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Msh4-203ENSMUST00000188338 2802 ntAPPRIS ALT2 TSL 2 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm15663-201ENSMUST00000145794 3200 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Alox8-201ENSMUST00000021262 3226 ntAPPRIS P2 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Zmiz2-202ENSMUST00000102914 3806 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Sap30bpos-201ENSMUST00000132264 2352 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Ldb2-205ENSMUST00000199261 2367 ntAPPRIS ALT1 TSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 1300002E11Rik-201ENSMUST00000180830 3557 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Dnah9-201ENSMUST00000080665 13798 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm21998-201ENSMUST00000117552 1308 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm35363-201ENSMUST00000209330 1317 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm13128-201ENSMUST00000105751 1745 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm42833-201ENSMUST00000196019 2124 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 H2-T3-204ENSMUST00000102675 2312 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Zfp943-201ENSMUST00000055349 2741 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Dlgap2-208ENSMUST00000150247 3138 ntAPPRIS ALT2 TSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Bhlhe40-201ENSMUST00000032194 3113 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Rcbtb2-209ENSMUST00000164822 3531 ntAPPRIS P2 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Cep170-201ENSMUST00000057037 6930 ntAPPRIS P2 TSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Stil-201ENSMUST00000030490 5285 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 CT009480.1-201ENSMUST00000225771 4480 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm10634-202ENSMUST00000188891 2464 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Ubxn2b-201ENSMUST00000029907 6642 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm22582-201ENSMUST00000102283 94 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Mkrn2os-202ENSMUST00000112957 964 ntAPPRIS P1 TSL 2 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm12856-201ENSMUST00000119471 1293 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm5210-201ENSMUST00000182150 1010 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm19927-201ENSMUST00000185792 781 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC8.35□□□□□ -1.07
Hmgb3O54879 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm44136-201ENSMUST00000203819 1106 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm18212-201ENSMUST00000211678 889 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm8162-201ENSMUST00000213951 665 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Id2-203ENSMUST00000222667 958 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 AC154290.1-201ENSMUST00000223786 1240 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
Hmgb3O54879 H2-M9-202ENSMUST00000087167 1070 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Traf7-215ENSMUST00000176652 3003 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm44271-201ENSMUST00000204525 2600 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Pfkfb3-216ENSMUST00000191668 2216 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Arhgef10l-204ENSMUST00000105797 3507 ntTSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm29685-201ENSMUST00000219670 2365 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Fkbp6-201ENSMUST00000044972 1447 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Csf1r-201ENSMUST00000025523 3870 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Micalcl-203ENSMUST00000106645 2309 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Chrm5-201ENSMUST00000099589 1599 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Nctc1-202ENSMUST00000132167 2104 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm5697-201ENSMUST00000122295 2482 ntBASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Unc45b-205ENSMUST00000164945 3555 ntAPPRIS ALT1 TSL 5 BASIC8.35□□□□□ -1.07
Hmgb3O54879 Zfp655-202ENSMUST00000167316 4104 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 Gm5592-201ENSMUST00000097044 3033 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Hmgb3O54879 B4galnt2-201ENSMUST00000038343 1722 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Kcne1-201ENSMUST00000051705 3155 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Abcb11-204ENSMUST00000180142 4963 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm45139-201ENSMUST00000206543 2057 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Mef2a-204ENSMUST00000107476 4759 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Thap2-201ENSMUST00000020346 3681 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Satb1-213ENSMUST00000169480 6194 ntAPPRIS P2 TSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Smarca1-201ENSMUST00000077569 4024 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm28988-201ENSMUST00000191363 1897 ntTSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Golga3-201ENSMUST00000031477 4805 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Tpd52-202ENSMUST00000091354 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Opalin-201ENSMUST00000087176 1838 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Mrpl32-202ENSMUST00000220621 3013 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Olfr463-203ENSMUST00000217095 1977 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Slc28a2-202ENSMUST00000110524 2836 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm25076-201ENSMUST00000104098 132 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC8.34□□□□□ -1.07
Hmgb3O54879 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm8216-201ENSMUST00000117232 601 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Lypla1-203ENSMUST00000119612 529 ntTSL 3 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Fam78b-202ENSMUST00000126198 2951 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm4726-201ENSMUST00000135604 736 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Platr12-201ENSMUST00000141027 462 ntTSL 3 BASIC8.34□□□□□ -1.07
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms