Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gmeb1-207ENSMUST00000168553 6523 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Hk1-201ENSMUST00000072357 3639 ntAPPRIS P4 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Arhgef9-205ENSMUST00000113883 5399 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Pik3cg-202ENSMUST00000085469 4584 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Kcna4-201ENSMUST00000037012 4792 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Timm10b-203ENSMUST00000106783 3273 ntAPPRIS P2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Soat1-207ENSMUST00000189661 8371 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Ins2-202ENSMUST00000105930 583 ntTSL 3 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm15725-201ENSMUST00000119947 1090 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm12749-201ENSMUST00000122138 1159 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm11670-201ENSMUST00000143435 511 ntTSL 2 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm7666-201ENSMUST00000146631 819 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm8918-201ENSMUST00000190587 1087 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm43179-201ENSMUST00000198797 275 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm5130-201ENSMUST00000210233 959 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm7594-201ENSMUST00000218595 871 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 AC134793.1-202ENSMUST00000227444 803 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 A430093F15Rik-201ENSMUST00000087947 985 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 C030014I23Rik-204ENSMUST00000217463 1370 ntTSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Akap2-207ENSMUST00000107600 7231 ntTSL 2 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Grb10-203ENSMUST00000109654 4755 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm17745-201ENSMUST00000212186 1692 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Agbl4-202ENSMUST00000097920 1798 ntAPPRIS P4 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Sfmbt2-202ENSMUST00000114861 1813 ntTSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 St7-204ENSMUST00000077080 1887 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm44933-201ENSMUST00000208637 1987 ntTSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Nrep-201ENSMUST00000051087 2223 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Kcnk10-202ENSMUST00000221240 7460 ntAPPRIS P2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Pfkm-202ENSMUST00000163507 2816 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 D030018L15Rik-203ENSMUST00000140253 2902 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Mat1a-201ENSMUST00000047286 3208 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Lipe-204ENSMUST00000149349 3713 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Usp28-203ENSMUST00000213874 4109 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Phka2-201ENSMUST00000033652 4133 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Olfr524-202ENSMUST00000215815 5044 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Grk3-201ENSMUST00000065167 6533 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Zfyve16-201ENSMUST00000022217 6150 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Ogfod1-203ENSMUST00000109556 5310 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Dhx30-215ENSMUST00000198425 3968 ntTSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Pcdhb20-201ENSMUST00000052179 3559 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Oacyl-202ENSMUST00000117694 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Prc1-201ENSMUST00000047558 3016 ntAPPRIS ALT1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Pibf1-201ENSMUST00000022650 2797 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Olfr478-202ENSMUST00000210173 2477 ntAPPRIS P1 TSL 3 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm16348-202ENSMUST00000146654 2385 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm42879-201ENSMUST00000198656 2214 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 AU019990-202ENSMUST00000143964 1614 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Atp5g1-204ENSMUST00000178611 4660 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Supt3-201ENSMUST00000050630 1508 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Drosha-201ENSMUST00000090292 4519 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Zfp592-201ENSMUST00000107353 7297 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 AC156631.1-201ENSMUST00000215213 1358 ntTSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm11801-201ENSMUST00000117807 746 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Recql5os1-201ENSMUST00000134391 396 ntTSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm25343-201ENSMUST00000157460 107 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm5732-201ENSMUST00000182596 1007 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm28450-201ENSMUST00000187349 638 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm38000-201ENSMUST00000192390 1215 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 AU022133-201ENSMUST00000200601 873 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 AC157650.1-201ENSMUST00000224582 610 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Magoh-201ENSMUST00000030348 692 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm5451-201ENSMUST00000080545 579 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Pcdhb6-201ENSMUST00000061717 3729 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Vwde-202ENSMUST00000203074 5626 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Fbxo34-204ENSMUST00000165714 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Retrieved 100 of 76,532 protein–RNA pairs in 60.1 ms