Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm2324-201ENSMUST00000187464 662 ntBASIC15.68■□□□□ 0.1
Cux1P53564 Gm5851-201ENSMUST00000194132 1204 ntBASIC15.68■□□□□ 0.1
Cux1P53564 Gm7997-201ENSMUST00000210546 980 ntBASIC15.68■□□□□ 0.1
Cux1P53564 Arl15-202ENSMUST00000224068 1002 ntBASIC15.68■□□□□ 0.1
Cux1P53564 AC108416.3-201ENSMUST00000226148 557 ntBASIC15.68■□□□□ 0.1
Cux1P53564 Lyg1-201ENSMUST00000027254 800 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Cux1P53564 Gm16214-201ENSMUST00000143710 1388 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cux1P53564 Ccna1-204ENSMUST00000198320 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cux1P53564 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Gm43412-201ENSMUST00000197455 2818 ntBASIC15.67■□□□□ 0.1
Cux1P53564 Gm29773-201ENSMUST00000212751 1895 ntTSL 2 BASIC15.67■□□□□ 0.1
Cux1P53564 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Cux1P53564 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC15.67■□□□□ 0.1
Cux1P53564 Spata33-207ENSMUST00000212760 4074 ntBASIC15.67■□□□□ 0.1
Cux1P53564 Gzmb-201ENSMUST00000015581 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Depdc1b-205ENSMUST00000171178 1404 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
Cux1P53564 Gm20642-201ENSMUST00000177185 1512 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Cux1P53564 CT010575.1-201ENSMUST00000220666 2924 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Gm12381-201ENSMUST00000126314 2186 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Gm12645-201ENSMUST00000117297 275 ntBASIC15.67■□□□□ 0.1
Cux1P53564 Ak3l2-ps-201ENSMUST00000120282 672 ntBASIC15.67■□□□□ 0.1
Cux1P53564 Ccpg1os-201ENSMUST00000124565 711 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Gm2044-201ENSMUST00000130771 911 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Gm16548-201ENSMUST00000133341 1226 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 4933428C19Rik-201ENSMUST00000146043 818 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Gm12976-201ENSMUST00000150171 459 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 6330549D23Rik-202ENSMUST00000159536 1102 ntBASIC15.67■□□□□ 0.1
Cux1P53564 Smarce1-ps1-201ENSMUST00000180067 1077 ntBASIC15.67■□□□□ 0.1
Cux1P53564 Trav4-1-201ENSMUST00000199078 330 ntBASIC15.67■□□□□ 0.1
Cux1P53564 Gm31784-201ENSMUST00000209523 1053 ntTSL 5 BASIC15.67■□□□□ 0.1
Cux1P53564 Gm36431-202ENSMUST00000209956 687 ntTSL 5 BASIC15.67■□□□□ 0.1
Cux1P53564 Bpifa5-201ENSMUST00000028986 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cux1P53564 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC15.67■□□□□ 0.1
Cux1P53564 Gm9583-201ENSMUST00000219613 1843 ntBASIC15.67■□□□□ 0.1
Cux1P53564 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC15.66■□□□□ 0.1
Cux1P53564 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC15.66■□□□□ 0.1
Cux1P53564 Gm19173-201ENSMUST00000204494 1523 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Cux1P53564 Ndufa9-203ENSMUST00000205002 1445 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Gm37333-201ENSMUST00000192904 2251 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Gm45496-201ENSMUST00000209918 2917 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Mospd1-201ENSMUST00000023836 1763 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Mospd1-202ENSMUST00000096447 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Lnpk-201ENSMUST00000064503 3195 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Trim34a-201ENSMUST00000060315 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Gm43522-201ENSMUST00000196697 1922 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Ighv1-22-201ENSMUST00000103507 351 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Cux1P53564 Gm12188-201ENSMUST00000117387 310 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Gm25319-201ENSMUST00000122552 325 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Gm22609-201ENSMUST00000158286 121 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Ighv6-4-201ENSMUST00000177949 297 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Cux1P53564 Gm9146-201ENSMUST00000182254 1006 ntBASIC15.66■□□□□ 0.1
Cux1P53564 CT030664.1-201ENSMUST00000223639 908 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Gm21818-202ENSMUST00000225144 894 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Cux1P53564 Rpp30-201ENSMUST00000025714 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Gm4795-201ENSMUST00000095717 1008 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Gm15550-201ENSMUST00000120824 1748 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Etnppl-203ENSMUST00000166187 1712 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Calcoco2-201ENSMUST00000068686 1621 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Cux1P53564 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 4930511J24Rik-201ENSMUST00000223541 1528 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Gm42467-201ENSMUST00000202954 1447 ntBASIC15.66■□□□□ 0.1
Cux1P53564 Pfkfb3-216ENSMUST00000191668 2216 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Katna1-202ENSMUST00000165806 1775 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Katna1-201ENSMUST00000019929 1774 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Cux1P53564 Zfp605-202ENSMUST00000112528 3158 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 1700092E19Rik-202ENSMUST00000154703 1650 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Zbtb3-201ENSMUST00000172175 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cux1P53564 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cux1P53564 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cux1P53564 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cux1P53564 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cux1P53564 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cux1P53564 Gm20735-201ENSMUST00000212077 1979 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cux1P53564 Scnn1a-207ENSMUST00000177329 2807 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Cux1P53564 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cux1P53564 Apex2-202ENSMUST00000112719 969 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cux1P53564 Gm11668-201ENSMUST00000119655 701 ntBASIC15.65■□□□□ 0.1
Cux1P53564 Gm24597-201ENSMUST00000122503 300 ntBASIC15.65■□□□□ 0.1
Cux1P53564 Gm6467-201ENSMUST00000171547 609 ntBASIC15.65■□□□□ 0.1
Cux1P53564 Gm20610-201ENSMUST00000176406 587 ntTSL 5 BASIC15.65■□□□□ 0.1
Cux1P53564 Gm37261-201ENSMUST00000194360 1101 ntBASIC15.65■□□□□ 0.1
Cux1P53564 Gm36569-201ENSMUST00000195082 965 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cux1P53564 Gm7727-201ENSMUST00000219830 671 ntBASIC15.65■□□□□ 0.1
Cux1P53564 Gm19045-201ENSMUST00000222488 1193 ntBASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms