Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Ptpa-210ENSMUST00000136009 810 ntTSL 3 BASIC12.07□□□□□ -0.48
Traf1P39428 Gm11205-201ENSMUST00000137738 431 ntTSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 1700112K13Rik-201ENSMUST00000141892 701 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 C2-206ENSMUST00000152417 2157 ntTSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Gm23582-201ENSMUST00000158530 139 ntBASIC12.07□□□□□ -0.48
Traf1P39428 Spef2-203ENSMUST00000159368 1422 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC12.07□□□□□ -0.48
Traf1P39428 Il10ra-202ENSMUST00000176222 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Gm5976-201ENSMUST00000180794 996 ntBASIC12.07□□□□□ -0.48
Traf1P39428 Gm29346-201ENSMUST00000188147 255 ntTSL 3 BASIC12.07□□□□□ -0.48
Traf1P39428 Cpsf4l-201ENSMUST00000018871 1235 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Gm19798-201ENSMUST00000201502 457 ntBASIC12.07□□□□□ -0.48
Traf1P39428 Gm34312-201ENSMUST00000204650 1092 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Gm32111-201ENSMUST00000207689 846 ntBASIC12.07□□□□□ -0.48
Traf1P39428 Gm9619-201ENSMUST00000211587 762 ntBASIC12.07□□□□□ -0.48
Traf1P39428 Hmg20a-205ENSMUST00000215269 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Hamp2-203ENSMUST00000217812 437 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 AC161052.1-201ENSMUST00000222856 910 ntTSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 AC138716.2-201ENSMUST00000226670 1016 ntBASIC12.07□□□□□ -0.48
Traf1P39428 AC105408.1-201ENSMUST00000227771 802 ntBASIC12.07□□□□□ -0.48
Traf1P39428 Vbp1-201ENSMUST00000033540 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 Olfr169-201ENSMUST00000090062 942 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Traf1P39428 Olfr1219-201ENSMUST00000099797 936 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Traf1P39428 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Gm45675-201ENSMUST00000211202 3429 ntBASIC12.07□□□□□ -0.48
Traf1P39428 Bdh1-203ENSMUST00000115227 3122 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Eif2s2-201ENSMUST00000099173 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 1600014C10Rik-202ENSMUST00000165308 3335 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 1600014C10Rik-204ENSMUST00000178207 3341 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Dcun1d4-203ENSMUST00000113558 4023 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 C130026L21Rik-204ENSMUST00000199587 1838 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Gm16429-202ENSMUST00000201400 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Gm7971-201ENSMUST00000086950 1848 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 Cd300lg-202ENSMUST00000107163 2605 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Tra2b-204ENSMUST00000161286 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Bcl11a-203ENSMUST00000109516 2329 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Qtrt2-201ENSMUST00000023387 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Gm6170-201ENSMUST00000187672 1388 ntBASIC12.06□□□□□ -0.48
Traf1P39428 Ankub1-202ENSMUST00000197088 1854 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Traf1P39428 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Gpr68-201ENSMUST00000053668 3099 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Traf1P39428 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Fibcd1-201ENSMUST00000028188 4751 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Mrgpre-201ENSMUST00000054048 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Lyrm1-202ENSMUST00000106516 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC12.06□□□□□ -0.48
Traf1P39428 Bex3-203ENSMUST00000113113 766 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Isg20-203ENSMUST00000120331 845 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Myl1-203ENSMUST00000120415 621 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Gm15982-201ENSMUST00000121681 554 ntBASIC12.06□□□□□ -0.48
Traf1P39428 Gm45591-201ENSMUST00000129058 843 ntTSL 3 BASIC12.06□□□□□ -0.48
Traf1P39428 Gm14055-201ENSMUST00000130262 668 ntTSL 5 BASIC12.06□□□□□ -0.48
Traf1P39428 Gm27444-201ENSMUST00000184157 137 ntBASIC12.06□□□□□ -0.48
Traf1P39428 Tex35-206ENSMUST00000187546 856 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Traf1P39428 Gm29157-201ENSMUST00000188753 612 ntBASIC12.06□□□□□ -0.48
Traf1P39428 Gm37362-201ENSMUST00000194567 634 ntTSL 5 BASIC12.06□□□□□ -0.48
Traf1P39428 Gm43752-201ENSMUST00000198475 697 ntBASIC12.06□□□□□ -0.48
Traf1P39428 1700048F04Rik-201ENSMUST00000199057 1064 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Gm9515-201ENSMUST00000200276 647 ntBASIC12.06□□□□□ -0.48
Traf1P39428 Gm4930-201ENSMUST00000219926 1087 ntBASIC12.06□□□□□ -0.48
Traf1P39428 Gm34983-202ENSMUST00000220432 494 ntTSL 3 BASIC12.06□□□□□ -0.48
Traf1P39428 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Mptx1-201ENSMUST00000027816 799 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Olfr47-201ENSMUST00000078057 1059 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Traf1P39428 H2-M9-202ENSMUST00000087167 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Nln-205ENSMUST00000224945 2486 ntBASIC12.06□□□□□ -0.48
Traf1P39428 AC154640.1-203ENSMUST00000228316 1618 ntBASIC12.06□□□□□ -0.48
Traf1P39428 Atg9a-205ENSMUST00000188347 4041 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Traf1P39428 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Traf1P39428 A1bg-201ENSMUST00000096418 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Traf1P39428 Camta2-201ENSMUST00000036299 4495 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Ptcd1-201ENSMUST00000031628 3087 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Fsd2-201ENSMUST00000042318 3985 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Traf1P39428 Cd2bp2-203ENSMUST00000205316 2912 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Toe1-201ENSMUST00000030451 2090 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Traf1P39428 Pax6-225ENSMUST00000167211 2814 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
Traf1P39428 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 AC154354.1-203ENSMUST00000225565 1364 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Zfp423-203ENSMUST00000165770 4334 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Dcun1d2-204ENSMUST00000110840 2853 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Fermt1-201ENSMUST00000038280 4915 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 Tcf4-203ENSMUST00000114977 3070 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Sorbs3-203ENSMUST00000227653 3061 ntAPPRIS ALT2 BASIC12.05□□□□□ -0.48
Traf1P39428 Slc25a12-206ENSMUST00000151937 6351 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 70.2 ms