Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 B930082K07Rik-201ENSMUST00000181046 2478 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Gm5122-202ENSMUST00000216854 1637 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Gm38413-202ENSMUST00000198449 2348 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Gm15604-201ENSMUST00000118350 1456 ntBASIC8.49□□□□□ -1.05
Hmgb3O54879 Gm29101-201ENSMUST00000188329 1471 ntBASIC8.49□□□□□ -1.05
Hmgb3O54879 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Txk-203ENSMUST00000197313 2190 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Atf6-201ENSMUST00000027974 7246 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Klf12-205ENSMUST00000228216 5890 ntAPPRIS P1 BASIC8.49□□□□□ -1.05
Hmgb3O54879 Gm44189-201ENSMUST00000204387 3083 ntBASIC8.49□□□□□ -1.05
Hmgb3O54879 Acmsd-201ENSMUST00000038006 2717 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Kif2a-206ENSMUST00000159772 2570 ntTSL 5 BASIC8.49□□□□□ -1.05
Hmgb3O54879 1700010I14Rik-203ENSMUST00000151609 1853 ntAPPRIS P3 TSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Eif4g2-213ENSMUST00000162415 7995 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Gm37032-201ENSMUST00000194882 2975 ntBASIC8.49□□□□□ -1.05
Hmgb3O54879 Gm16387-201ENSMUST00000180990 2632 ntBASIC8.49□□□□□ -1.05
Hmgb3O54879 Slc5a7-201ENSMUST00000095712 5176 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
Hmgb3O54879 Olfr63-203ENSMUST00000217023 7023 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Bdp1-204ENSMUST00000109379 7567 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm19027-201ENSMUST00000187291 1355 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 Rrn3-201ENSMUST00000023363 3597 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Zfp60-208ENSMUST00000167955 2115 ntAPPRIS P1 TSL 2 BASIC8.48□□□□□ -1.05
Hmgb3O54879 3632454L22Rik-202ENSMUST00000153610 2872 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Wdr78-202ENSMUST00000036557 3479 ntTSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Pcdh15-236ENSMUST00000193174 5936 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Epha5-203ENSMUST00000113399 5166 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Pikfyve-201ENSMUST00000081154 11237 ntAPPRIS P3 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 CU062626.3-201ENSMUST00000225522 1411 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 Kcnj10-201ENSMUST00000056136 5407 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gpatch4-201ENSMUST00000029707 1630 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Trib2-201ENSMUST00000020922 4198 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Scp2-202ENSMUST00000106701 772 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm14395-201ENSMUST00000120494 563 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm13350-201ENSMUST00000120519 479 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Ptgds-201ENSMUST00000015234 901 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm13938-201ENSMUST00000156809 493 ntTSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC8.48□□□□□ -1.05
Hmgb3O54879 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm35584-201ENSMUST00000191767 641 ntTSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm44753-202ENSMUST00000208297 562 ntTSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 AC154319.1-201ENSMUST00000216330 312 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 AC167364.1-201ENSMUST00000221495 784 ntTSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 AL589735.1-201ENSMUST00000224353 270 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 E330021D16Rik-201ENSMUST00000058713 1116 ntAPPRIS P1 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gpatch2l-201ENSMUST00000071106 3829 ntAPPRIS ALT2 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Fam217a-202ENSMUST00000223834 2253 ntAPPRIS ALT2 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Mcm5-205ENSMUST00000212811 2653 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Ttc16-206ENSMUST00000161430 2874 ntAPPRIS P3 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Cep135-201ENSMUST00000049060 5313 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Sf3b3-201ENSMUST00000042012 4525 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Fes-208ENSMUST00000206728 2707 ntAPPRIS ALT1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Cpm-201ENSMUST00000020399 5195 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Specc1-207ENSMUST00000201364 4955 ntAPPRIS P4 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 4930566F21Rik-201ENSMUST00000201177 1535 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Rreb1-203ENSMUST00000110238 7437 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Uhrf1-204ENSMUST00000113039 3391 ntAPPRIS P3 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm42460-201ENSMUST00000198863 2567 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm13498-201ENSMUST00000119159 2166 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 Camk2g-202ENSMUST00000080440 3604 ntAPPRIS P4 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Adcy4-201ENSMUST00000002398 3444 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Ttll7-201ENSMUST00000037942 7394 ntAPPRIS P2 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 2810029C07Rik-201ENSMUST00000180698 1954 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Inpp5d-210ENSMUST00000169754 4937 ntAPPRIS P3 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Utp14b-202ENSMUST00000151622 3685 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm9860-201ENSMUST00000211426 3653 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 Zmiz2-204ENSMUST00000109786 4319 ntAPPRIS P2 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Gm5308-201ENSMUST00000196752 1354 ntBASIC8.48□□□□□ -1.05
Hmgb3O54879 Pcdh15-225ENSMUST00000149977 5843 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
Hmgb3O54879 Nupl1-202ENSMUST00000041905 3913 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
Hmgb3O54879 Cspp1-201ENSMUST00000071087 4355 ntAPPRIS P2 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm43086-201ENSMUST00000202536 2657 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 AC122881.1-201ENSMUST00000225757 2695 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Trim9-201ENSMUST00000110520 4156 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm4784-201ENSMUST00000117365 1824 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Pabpc4l-202ENSMUST00000192793 5252 ntAPPRIS P1 TSL 3 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Ablim1-212ENSMUST00000111558 3123 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 AC159813.1-201ENSMUST00000222671 2263 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Pcx-202ENSMUST00000113825 4044 ntAPPRIS P3 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Fam71e2-202ENSMUST00000174409 2716 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Pycard-201ENSMUST00000033056 3800 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm38169-201ENSMUST00000191822 2539 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Wdhd1-201ENSMUST00000111790 2962 ntTSL 2 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Cpsf3-211ENSMUST00000222968 1858 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Rad51d-201ENSMUST00000018985 3426 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Fam168a-202ENSMUST00000107042 6388 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms