Protein–RNA interactions for Protein: Q9QUM7

Msh5, MutS protein homolog 5, mousemouse

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh5Q9QUM7 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Msh5Q9QUM7 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Msh5Q9QUM7 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.11■□□□□ 0.81
Msh5Q9QUM7 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Msh5Q9QUM7 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh5Q9QUM7 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.11■□□□□ 0.81
Msh5Q9QUM7 AC166356.1-201ENSMUST00000228236 1426 ntBASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Msh5Q9QUM7 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
Msh5Q9QUM7 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Msh5Q9QUM7 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh5Q9QUM7 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh5Q9QUM7 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh5Q9QUM7 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.09■□□□□ 0.81
Msh5Q9QUM7 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh5Q9QUM7 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh5Q9QUM7 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh5Q9QUM7 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh5Q9QUM7 Gm7143-201ENSMUST00000222811 859 ntBASIC20.08■□□□□ 0.81
Msh5Q9QUM7 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh5Q9QUM7 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh5Q9QUM7 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.07■□□□□ 0.8
Msh5Q9QUM7 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.07■□□□□ 0.8
Msh5Q9QUM7 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Msh5Q9QUM7 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh5Q9QUM7 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh5Q9QUM7 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh5Q9QUM7 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.05■□□□□ 0.8
Msh5Q9QUM7 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh5Q9QUM7 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh5Q9QUM7 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh5Q9QUM7 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh5Q9QUM7 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
Msh5Q9QUM7 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh5Q9QUM7 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 Gm9870-201ENSMUST00000063874 645 ntBASIC20.03■□□□□ 0.8
Msh5Q9QUM7 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Msh5Q9QUM7 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.02■□□□□ 0.8
Msh5Q9QUM7 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh5Q9QUM7 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms