Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lima1Q9ERG0 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lima1Q9ERG0 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lima1Q9ERG0 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lima1Q9ERG0 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lima1Q9ERG0 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lima1Q9ERG0 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Lima1Q9ERG0 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Lima1Q9ERG0 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lima1Q9ERG0 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lima1Q9ERG0 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lima1Q9ERG0 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Lima1Q9ERG0 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lima1Q9ERG0 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.49■□□□□ 0.71
Lima1Q9ERG0 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.49■□□□□ 0.71
Lima1Q9ERG0 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.49■□□□□ 0.71
Lima1Q9ERG0 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.49■□□□□ 0.71
Lima1Q9ERG0 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Lima1Q9ERG0 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lima1Q9ERG0 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Lima1Q9ERG0 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lima1Q9ERG0 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lima1Q9ERG0 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Lima1Q9ERG0 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lima1Q9ERG0 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Golph3-205ENSMUST00000228671 2842 ntBASIC19.47■□□□□ 0.71
Lima1Q9ERG0 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lima1Q9ERG0 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Lima1Q9ERG0 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lima1Q9ERG0 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Lima1Q9ERG0 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lima1Q9ERG0 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Lima1Q9ERG0 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Lima1Q9ERG0 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.45■□□□□ 0.7
Lima1Q9ERG0 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Lima1Q9ERG0 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.45■□□□□ 0.7
Lima1Q9ERG0 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lima1Q9ERG0 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Lima1Q9ERG0 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.45■□□□□ 0.7
Lima1Q9ERG0 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lima1Q9ERG0 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lima1Q9ERG0 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.45■□□□□ 0.7
Lima1Q9ERG0 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lima1Q9ERG0 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
Lima1Q9ERG0 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Lima1Q9ERG0 Gm15546-201ENSMUST00000122095 826 ntBASIC19.44■□□□□ 0.7
Lima1Q9ERG0 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.44■□□□□ 0.7
Lima1Q9ERG0 Gm15820-201ENSMUST00000201566 728 ntBASIC19.44■□□□□ 0.7
Lima1Q9ERG0 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lima1Q9ERG0 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lima1Q9ERG0 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.43■□□□□ 0.7
Lima1Q9ERG0 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.43■□□□□ 0.7
Lima1Q9ERG0 Gm40881-201ENSMUST00000223397 166 ntBASIC19.43■□□□□ 0.7
Lima1Q9ERG0 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lima1Q9ERG0 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lima1Q9ERG0 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lima1Q9ERG0 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.43■□□□□ 0.7
Lima1Q9ERG0 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms