Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Use1Q9CQ56 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Use1Q9CQ56 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Use1Q9CQ56 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Use1Q9CQ56 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC18.69■□□□□ 0.58
Use1Q9CQ56 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Use1Q9CQ56 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.68■□□□□ 0.58
Use1Q9CQ56 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.67■□□□□ 0.58
Use1Q9CQ56 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Use1Q9CQ56 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Use1Q9CQ56 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Use1Q9CQ56 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Use1Q9CQ56 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Use1Q9CQ56 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Use1Q9CQ56 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Use1Q9CQ56 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Use1Q9CQ56 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Use1Q9CQ56 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC18.65■□□□□ 0.58
Use1Q9CQ56 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Use1Q9CQ56 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Use1Q9CQ56 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.65■□□□□ 0.58
Use1Q9CQ56 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.65■□□□□ 0.58
Use1Q9CQ56 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Use1Q9CQ56 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Use1Q9CQ56 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.65■□□□□ 0.58
Use1Q9CQ56 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Use1Q9CQ56 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Use1Q9CQ56 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Use1Q9CQ56 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Use1Q9CQ56 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Use1Q9CQ56 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Use1Q9CQ56 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Use1Q9CQ56 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Use1Q9CQ56 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Use1Q9CQ56 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Use1Q9CQ56 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Use1Q9CQ56 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Use1Q9CQ56 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.63■□□□□ 0.57
Use1Q9CQ56 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Use1Q9CQ56 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Use1Q9CQ56 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Mir6236-201ENSMUST00000184437 123 ntBASIC18.62■□□□□ 0.57
Use1Q9CQ56 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
Use1Q9CQ56 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Use1Q9CQ56 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Use1Q9CQ56 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Use1Q9CQ56 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Use1Q9CQ56 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Use1Q9CQ56 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Use1Q9CQ56 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Use1Q9CQ56 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC18.61■□□□□ 0.57
Use1Q9CQ56 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Use1Q9CQ56 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Use1Q9CQ56 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Use1Q9CQ56 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Use1Q9CQ56 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.6■□□□□ 0.57
Use1Q9CQ56 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.6■□□□□ 0.57
Use1Q9CQ56 Gm15820-201ENSMUST00000201566 728 ntBASIC18.6■□□□□ 0.57
Use1Q9CQ56 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.6■□□□□ 0.57
Use1Q9CQ56 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Use1Q9CQ56 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Use1Q9CQ56 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Use1Q9CQ56 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Use1Q9CQ56 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Use1Q9CQ56 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Use1Q9CQ56 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms