Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp11Q99K46 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Usp11Q99K46 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp11Q99K46 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp11Q99K46 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Usp11Q99K46 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp11Q99K46 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp11Q99K46 Gm9847-201ENSMUST00000052528 599 ntBASIC20.74■□□□□ 0.91
Usp11Q99K46 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp11Q99K46 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp11Q99K46 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp11Q99K46 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp11Q99K46 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp11Q99K46 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp11Q99K46 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp11Q99K46 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp11Q99K46 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.74■□□□□ 0.91
Usp11Q99K46 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp11Q99K46 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp11Q99K46 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp11Q99K46 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp11Q99K46 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC20.73■□□□□ 0.91
Usp11Q99K46 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.73■□□□□ 0.91
Usp11Q99K46 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC20.73■□□□□ 0.91
Usp11Q99K46 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp11Q99K46 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp11Q99K46 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp11Q99K46 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp11Q99K46 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Usp11Q99K46 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp11Q99K46 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC20.72■□□□□ 0.91
Usp11Q99K46 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC20.72■□□□□ 0.91
Usp11Q99K46 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp11Q99K46 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp11Q99K46 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp11Q99K46 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp11Q99K46 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp11Q99K46 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
Usp11Q99K46 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC20.71■□□□□ 0.91
Usp11Q99K46 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Usp11Q99K46 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp11Q99K46 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Usp11Q99K46 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Usp11Q99K46 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC20.7■□□□□ 0.9
Usp11Q99K46 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp11Q99K46 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp11Q99K46 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Usp11Q99K46 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp11Q99K46 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp11Q99K46 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp11Q99K46 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp11Q99K46 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp11Q99K46 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC20.69■□□□□ 0.9
Usp11Q99K46 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC20.69■□□□□ 0.9
Usp11Q99K46 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
Usp11Q99K46 Golgb1-201ENSMUST00000023534 498 ntBASIC20.69■□□□□ 0.9
Usp11Q99K46 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp11Q99K46 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp11Q99K46 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp11Q99K46 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp11Q99K46 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.69■□□□□ 0.9
Usp11Q99K46 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Usp11Q99K46 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Usp11Q99K46 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp11Q99K46 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp11Q99K46 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp11Q99K46 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.68■□□□□ 0.9
Usp11Q99K46 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Usp11Q99K46 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Gm10657-201ENSMUST00000193528 1031 ntBASIC20.68■□□□□ 0.9
Usp11Q99K46 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.68■□□□□ 0.9
Usp11Q99K46 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Usp11Q99K46 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Usp11Q99K46 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Usp11Q99K46 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Usp11Q99K46 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp11Q99K46 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp11Q99K46 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp11Q99K46 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Usp11Q99K46 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms