Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdha1Q91Y21 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdha1Q91Y21 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdha1Q91Y21 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha1Q91Y21 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha1Q91Y21 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha1Q91Y21 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha1Q91Y21 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha1Q91Y21 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha1Q91Y21 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha1Q91Y21 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha1Q91Y21 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha1Q91Y21 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Pcdha1Q91Y21 Smad6-203ENSMUST00000179458 273 ntBASIC20.69■□□□□ 0.9
Pcdha1Q91Y21 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha1Q91Y21 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.69■□□□□ 0.9
Pcdha1Q91Y21 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha1Q91Y21 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha1Q91Y21 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha1Q91Y21 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.69■□□□□ 0.9
Pcdha1Q91Y21 Slc35b2-207ENSMUST00000226086 850 ntBASIC20.68■□□□□ 0.9
Pcdha1Q91Y21 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Pcdha1Q91Y21 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha1Q91Y21 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
Pcdha1Q91Y21 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Pcdha1Q91Y21 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha1Q91Y21 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha1Q91Y21 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Gm43060-201ENSMUST00000200621 289 ntBASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha1Q91Y21 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdha1Q91Y21 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdha1Q91Y21 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdha1Q91Y21 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdha1Q91Y21 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdha1Q91Y21 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdha1Q91Y21 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdha1Q91Y21 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdha1Q91Y21 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Mir6236-201ENSMUST00000184437 123 ntBASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Pcdha1Q91Y21 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Pcdha1Q91Y21 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Pcdha1Q91Y21 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Pcdha1Q91Y21 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Pcdha1Q91Y21 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Pcdha1Q91Y21 Gm5874-201ENSMUST00000096101 508 ntBASIC20.64■□□□□ 0.89
Pcdha1Q91Y21 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Pcdha1Q91Y21 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Pcdha1Q91Y21 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Pcdha1Q91Y21 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Pcdha1Q91Y21 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Pcdha1Q91Y21 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pcdha1Q91Y21 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms