Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Rpp40Q8R1F9 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Rpp40Q8R1F9 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Rpp40Q8R1F9 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Rpp40Q8R1F9 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Rpp40Q8R1F9 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpp40Q8R1F9 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.32■■□□□ 1
Rpp40Q8R1F9 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
Rpp40Q8R1F9 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Rpp40Q8R1F9 Smad6-203ENSMUST00000179458 273 ntBASIC21.32■■□□□ 1
Rpp40Q8R1F9 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpp40Q8R1F9 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpp40Q8R1F9 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.31■■□□□ 1
Rpp40Q8R1F9 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.31■■□□□ 1
Rpp40Q8R1F9 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rpp40Q8R1F9 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC21.3■■□□□ 1
Rpp40Q8R1F9 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Rpp40Q8R1F9 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC21.3■■□□□ 1
Rpp40Q8R1F9 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.3■■□□□ 1
Rpp40Q8R1F9 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.3■■□□□ 1
Rpp40Q8R1F9 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Rpp40Q8R1F9 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.3■■□□□ 1
Rpp40Q8R1F9 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Rpp40Q8R1F9 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rpp40Q8R1F9 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.29■■□□□ 1
Rpp40Q8R1F9 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpp40Q8R1F9 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Rpp40Q8R1F9 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Rpp40Q8R1F9 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Rpp40Q8R1F9 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Rpp40Q8R1F9 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Rpp40Q8R1F9 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.28■■□□□ 1
Rpp40Q8R1F9 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
Rpp40Q8R1F9 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
Rpp40Q8R1F9 Gm26833-201ENSMUST00000180899 440 ntBASIC21.28■■□□□ 1
Rpp40Q8R1F9 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.28■■□□□ 1
Rpp40Q8R1F9 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.28■■□□□ 1
Rpp40Q8R1F9 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Rpp40Q8R1F9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Rpp40Q8R1F9 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Rpp40Q8R1F9 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.27■■□□□ 1
Rpp40Q8R1F9 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Rpp40Q8R1F9 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
Rpp40Q8R1F9 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Rpp40Q8R1F9 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.27■■□□□ 1
Rpp40Q8R1F9 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.27■■□□□ 1
Rpp40Q8R1F9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
Rpp40Q8R1F9 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Rpp40Q8R1F9 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Rpp40Q8R1F9 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Gm40848-201ENSMUST00000221998 324 ntBASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpp40Q8R1F9 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.25■□□□□ 0.99
Rpp40Q8R1F9 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rpp40Q8R1F9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Rpp40Q8R1F9 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
Rpp40Q8R1F9 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Rpp40Q8R1F9 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Rpp40Q8R1F9 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rpp40Q8R1F9 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rpp40Q8R1F9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.25■□□□□ 0.99
Rpp40Q8R1F9 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rpp40Q8R1F9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rpp40Q8R1F9 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rpp40Q8R1F9 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Rpp40Q8R1F9 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Rpp40Q8R1F9 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Rpp40Q8R1F9 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms