Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Gm12366-201ENSMUST00000121722 873 ntBASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Gm5786-201ENSMUST00000085368 882 ntBASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28bQ8CEG5 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28bQ8CEG5 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28bQ8CEG5 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc28bQ8CEG5 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc28bQ8CEG5 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
Ccdc28bQ8CEG5 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28bQ8CEG5 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28bQ8CEG5 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28bQ8CEG5 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28bQ8CEG5 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28bQ8CEG5 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28bQ8CEG5 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28bQ8CEG5 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28bQ8CEG5 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28bQ8CEG5 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 AC166356.1-201ENSMUST00000228236 1426 ntBASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28bQ8CEG5 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28bQ8CEG5 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms