Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Ccdc40Q8BI79 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.54■□□□□ 0.88
Ccdc40Q8BI79 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc40Q8BI79 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc40Q8BI79 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc40Q8BI79 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc40Q8BI79 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.53■□□□□ 0.88
Ccdc40Q8BI79 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc40Q8BI79 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc40Q8BI79 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.53■□□□□ 0.88
Ccdc40Q8BI79 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Ccdc40Q8BI79 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.52■□□□□ 0.88
Ccdc40Q8BI79 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.52■□□□□ 0.88
Ccdc40Q8BI79 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Ccdc40Q8BI79 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ccdc40Q8BI79 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ccdc40Q8BI79 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ccdc40Q8BI79 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc40Q8BI79 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc40Q8BI79 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc40Q8BI79 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC20.5■□□□□ 0.87
Ccdc40Q8BI79 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC20.5■□□□□ 0.87
Ccdc40Q8BI79 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc40Q8BI79 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc40Q8BI79 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc40Q8BI79 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc40Q8BI79 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Ccdc40Q8BI79 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc40Q8BI79 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc40Q8BI79 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.48■□□□□ 0.87
Ccdc40Q8BI79 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.48■□□□□ 0.87
Ccdc40Q8BI79 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.48■□□□□ 0.87
Ccdc40Q8BI79 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Ccdc40Q8BI79 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc40Q8BI79 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc40Q8BI79 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc40Q8BI79 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc40Q8BI79 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc40Q8BI79 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc40Q8BI79 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc40Q8BI79 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc40Q8BI79 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc40Q8BI79 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc40Q8BI79 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc40Q8BI79 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc40Q8BI79 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc40Q8BI79 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Ccdc40Q8BI79 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc40Q8BI79 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc40Q8BI79 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc40Q8BI79 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms