Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ubfd1Q78JW9 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ubfd1Q78JW9 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Ubfd1Q78JW9 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ubfd1Q78JW9 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Ubfd1Q78JW9 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ubfd1Q78JW9 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ubfd1Q78JW9 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ubfd1Q78JW9 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ubfd1Q78JW9 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ubfd1Q78JW9 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ubfd1Q78JW9 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ubfd1Q78JW9 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ubfd1Q78JW9 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.34■□□□□ 0.69
Ubfd1Q78JW9 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC19.34■□□□□ 0.69
Ubfd1Q78JW9 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ubfd1Q78JW9 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ubfd1Q78JW9 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ubfd1Q78JW9 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.32■□□□□ 0.68
Ubfd1Q78JW9 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Ubfd1Q78JW9 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ubfd1Q78JW9 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.31■□□□□ 0.68
Ubfd1Q78JW9 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.31■□□□□ 0.68
Ubfd1Q78JW9 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ubfd1Q78JW9 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.31■□□□□ 0.68
Ubfd1Q78JW9 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ubfd1Q78JW9 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ubfd1Q78JW9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ubfd1Q78JW9 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ubfd1Q78JW9 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.3■□□□□ 0.68
Ubfd1Q78JW9 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ubfd1Q78JW9 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.3■□□□□ 0.68
Ubfd1Q78JW9 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ubfd1Q78JW9 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
Ubfd1Q78JW9 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ubfd1Q78JW9 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ubfd1Q78JW9 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms