Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Six4Q61321 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
Six4Q61321 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Six4Q61321 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Six4Q61321 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Six4Q61321 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.09■□□□□ 0.81
Six4Q61321 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Six4Q61321 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.09■□□□□ 0.81
Six4Q61321 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Six4Q61321 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Six4Q61321 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Six4Q61321 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
Six4Q61321 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Six4Q61321 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Six4Q61321 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Six4Q61321 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Six4Q61321 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Six4Q61321 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Six4Q61321 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Six4Q61321 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Six4Q61321 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Six4Q61321 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Six4Q61321 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Six4Q61321 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Six4Q61321 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.07■□□□□ 0.8
Six4Q61321 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Six4Q61321 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.07■□□□□ 0.8
Six4Q61321 Spcs1-204ENSMUST00000226782 949 ntBASIC20.07■□□□□ 0.8
Six4Q61321 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Six4Q61321 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Six4Q61321 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Six4Q61321 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Six4Q61321 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Six4Q61321 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Six4Q61321 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Six4Q61321 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Six4Q61321 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Six4Q61321 Mir7075-201ENSMUST00000184187 82 ntBASIC20.06■□□□□ 0.8
Six4Q61321 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC20.06■□□□□ 0.8
Six4Q61321 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Six4Q61321 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.06■□□□□ 0.8
Six4Q61321 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Six4Q61321 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Six4Q61321 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Six4Q61321 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.05■□□□□ 0.8
Six4Q61321 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Six4Q61321 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Six4Q61321 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Six4Q61321 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.05■□□□□ 0.8
Six4Q61321 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Six4Q61321 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Six4Q61321 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Six4Q61321 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Six4Q61321 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Six4Q61321 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Six4Q61321 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Six4Q61321 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Six4Q61321 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Six4Q61321 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Six4Q61321 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC20.04■□□□□ 0.8
Six4Q61321 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Six4Q61321 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
Six4Q61321 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Six4Q61321 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Six4Q61321 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.03■□□□□ 0.8
Six4Q61321 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Six4Q61321 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Six4Q61321 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.03■□□□□ 0.8
Six4Q61321 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Six4Q61321 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Six4Q61321 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.03■□□□□ 0.8
Six4Q61321 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Six4Q61321 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Six4Q61321 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Six4Q61321 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Six4Q61321 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Six4Q61321 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Six4Q61321 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Six4Q61321 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Six4Q61321 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.02■□□□□ 0.79
Six4Q61321 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.02■□□□□ 0.79
Six4Q61321 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Six4Q61321 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Six4Q61321 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Six4Q61321 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Six4Q61321 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Six4Q61321 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Six4Q61321 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Six4Q61321 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Six4Q61321 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Six4Q61321 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Six4Q61321 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Six4Q61321 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.01■□□□□ 0.79
Six4Q61321 Gm6139-201ENSMUST00000079261 882 ntBASIC20.01■□□□□ 0.79
Six4Q61321 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Six4Q61321 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.01■□□□□ 0.79
Six4Q61321 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20■□□□□ 0.79
Six4Q61321 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Six4Q61321 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Six4Q61321 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms