Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nr1h4Q60641 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.86■□□□□ 0.61
Nr1h4Q60641 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nr1h4Q60641 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nr1h4Q60641 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC18.86■□□□□ 0.61
Nr1h4Q60641 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nr1h4Q60641 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nr1h4Q60641 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nr1h4Q60641 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Nr1h4Q60641 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.86■□□□□ 0.61
Nr1h4Q60641 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nr1h4Q60641 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nr1h4Q60641 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nr1h4Q60641 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nr1h4Q60641 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nr1h4Q60641 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nr1h4Q60641 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.84■□□□□ 0.61
Nr1h4Q60641 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nr1h4Q60641 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.84■□□□□ 0.61
Nr1h4Q60641 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Nr1h4Q60641 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Nr1h4Q60641 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Nr1h4Q60641 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC18.83■□□□□ 0.6
Nr1h4Q60641 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Nr1h4Q60641 Gm7143-201ENSMUST00000222811 859 ntBASIC18.83■□□□□ 0.6
Nr1h4Q60641 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Nr1h4Q60641 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Nr1h4Q60641 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Nr1h4Q60641 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Nr1h4Q60641 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
Nr1h4Q60641 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Nr1h4Q60641 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nr1h4Q60641 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.82■□□□□ 0.6
Nr1h4Q60641 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nr1h4Q60641 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nr1h4Q60641 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Nr1h4Q60641 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nr1h4Q60641 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nr1h4Q60641 Gm13238-201ENSMUST00000117655 780 ntBASIC18.81■□□□□ 0.6
Nr1h4Q60641 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nr1h4Q60641 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nr1h4Q60641 Gm5921-201ENSMUST00000075898 882 ntBASIC18.81■□□□□ 0.6
Nr1h4Q60641 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Nr1h4Q60641 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.81■□□□□ 0.6
Nr1h4Q60641 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nr1h4Q60641 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Nr1h4Q60641 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Nr1h4Q60641 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Nr1h4Q60641 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Nr1h4Q60641 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Nr1h4Q60641 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Nr1h4Q60641 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Nr1h4Q60641 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Nr1h4Q60641 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Nr1h4Q60641 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nr1h4Q60641 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
Nr1h4Q60641 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Nr1h4Q60641 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Nr1h4Q60641 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nr1h4Q60641 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC18.78■□□□□ 0.6
Nr1h4Q60641 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nr1h4Q60641 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Nr1h4Q60641 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nr1h4Q60641 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nr1h4Q60641 Cap2-205ENSMUST00000225824 1634 ntBASIC18.78■□□□□ 0.6
Nr1h4Q60641 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nr1h4Q60641 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.77■□□□□ 0.6
Nr1h4Q60641 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nr1h4Q60641 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms